11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/fuse/makefile src/fuse/makefile
index f843ada..70d2bbb 100644
--- src/fuse/makefile
+++ src/fuse/makefile
@@ -1,35 +1,36 @@
+kentSrc = ..
 include ../inc/common.mk
 include ./fuse.mk
 
 FUSE_DIRS = \
 	udcFuse
 
 all:    
 	@for D in $(FUSE_DIRS) x; do \
 	  if test "$$D" != "x" ; then \
 	    ( cd $$D && echo $$D && $(MAKE) ) ;\
 	    x=$$? ; if [ $$x -ne 0 ]; then exit $$x ; fi \
 	    fi ;\
 	done
 
 alpha: all
 
 compile:
 	@for D in $(FUSE_DIRS) x; do \
 	  if test "$$D" != "x" ; then \
 	    ( cd $$D && echo $$D && $(MAKE) compile ) ;\
 	    x=$$? ; if [ $$x -ne 0 ]; then exit $$x ; fi \
 	    fi ;\
 	done
 
 
 # clean would be redundant with top-level makefile's (find & rm .o's)
 
 clean::
 	rm -f ${O}
 	@for D in $(FUSE_DIRS) x; do \
 	  if test "$$D" != "x" ; then \
 	    ( cd $$D && echo $$D && $(MAKE) clean ) ;\
 	    x=$$? ; if [ $$x -ne 0 ]; then exit $$x ; fi \
 	    fi ;\
 	done