11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/hg/bedThickOnly/makefile src/hg/bedThickOnly/makefile
index c82abb7..351a68b 100644
--- src/hg/bedThickOnly/makefile
+++ src/hg/bedThickOnly/makefile
@@ -1,14 +1,15 @@
+kentSrc = ../..
 include ../../inc/common.mk
 
 L += ${MYSQLLIBS} -lm
 MYLIBDIR = ../../lib/$(MACHTYPE)
 MYLIBS =  $(MYLIBDIR)/jkhgap.a $(MYLIBDIR)/jkweb.a
 
 O = bedThickOnly.o
 
 bedThickOnly: $O ${MYLIBS}
 	${CC} ${COPT} -o ${BINDIR}/bedThickOnly $O ${MYLIBS} $L
 	${STRIP} ${BINDIR}/bedThickOnly${EXE}
 
 clean:
 	rm -f $O