11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/hg/geoIp/makefile src/hg/geoIp/makefile
index 978047e..f2d0b50 100644
--- src/hg/geoIp/makefile
+++ src/hg/geoIp/makefile
@@ -1,21 +1,22 @@
+kentSrc = ../..
 include ../../inc/common.mk
 
 HG_INC+=-I../../inc
 
 L += -lm ${SOCKETLIB}
 MYLIBDIR = ../../lib/${MACHTYPE}
 MYLIBS = $(MYLIBDIR)/jkweb.a 
 
 A = geoIpToCountry
 
 O = $(A).o
 
 $(A): ${O} ${MYLIBS}
 	@${MKDIR} "${DESTDIR}${BINDIR}"
 	${CC} ${COPT} ${CFLAGS} -o ${DESTDIR}${BINDIR}/${A}${EXE} $O ${MYLIBS} ${L}
 	${STRIP} ${DESTDIR}${BINDIR}/${A}${EXE}
 
 clean::
 	rm -f ${O}
 	rm *.sql