11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/hg/gisaid/makefile src/hg/gisaid/makefile
index 8e56fb8..9f245f6 100644
--- src/hg/gisaid/makefile
+++ src/hg/gisaid/makefile
@@ -1,19 +1,20 @@
+kentSrc = ../..
 include ../../inc/common.mk
 
 SUBDIRS = gisaidSample gisaidSubj gisaidTable
 
 my:: $(SUBDIRS:%=%.my)
 %.my:
 	(cd $* && ${MAKE} my)
 
 alpha:: $(SUBDIRS:%=%.alpha)
 %.alpha:
 	(cd $* && ${MAKE} alpha)
 
 beta:: $(SUBDIRS:%=%.beta)
 %.beta:
 	(cd $* && ${MAKE} beta)
 
 clean:: $(SUBDIRS:%=%.clean)
 %.clean:
 	(cd $* && ${MAKE} clean)