11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/hg/hgGateway/makefile src/hg/hgGateway/makefile
index 7ee7d4e..e4f9283 100644
--- src/hg/hgGateway/makefile
+++ src/hg/hgGateway/makefile
@@ -1,27 +1,28 @@
+kentSrc = ../..
 include ../../inc/common.mk
 
 HG_WARN=-Wall
 
 L += -lm ${MYSQLLIBS}
 MYLIBDIR = ../../lib/${MACHTYPE}
 MYLIBS =  ${MYLIBDIR}/jkhgap.a ${MYLIBDIR}/jkweb.a
 
 A = hgGateway
 
 O = $A.o
 
 include ../../inc/cgi_build_rules.mk
 
 hgGateway.html.h: hgGateway.html
 	sed -e 's/\\/\\\\/g; s/"/\\"/g; s/^/"/; s/$$/\\n"/;' hgGateway.html > hgGateway.html.h
 
 ${A}.c: hgGateway.html.h
 
 ${A}.o: ${A}.c hgGateway.html.h
 
 clean::
 	rm -f hgGateway.html.h
 
 compile:: $O
 	${CC} $O ${MYLIBS} ${L}
 	mv ${AOUT} $A${EXE}