11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/hg/hgHubConnect/makefile src/hg/hgHubConnect/makefile
index bf0ac2a..e2611ff 100644
--- src/hg/hgHubConnect/makefile
+++ src/hg/hgHubConnect/makefile
@@ -1,16 +1,17 @@
+kentSrc = ../..
 include ../../inc/common.mk
 
 
 L += -lm ${MYSQLLIBS}
 MYLIBDIR = ../../lib/${MACHTYPE}
 MYLIBS =  ${MYLIBDIR}/jkhgap.a $(MYLIBDIR)/jkweb.a
 
 A = hgHubConnect
 
 O = $A.o
 
 include ../../inc/cgi_build_rules.mk
  
 compile: $O
 	${CC} -o $A${EXE} -g $O ${MYLIBS} ${L}