11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/hg/hgLogin/makefile src/hg/hgLogin/makefile
index e87245b..9455b5e 100644
--- src/hg/hgLogin/makefile
+++ src/hg/hgLogin/makefile
@@ -1,24 +1,25 @@
+kentSrc = ../..
 include ../../inc/common.mk
 
 L += -lm ${MYSQLLIBS} 
 MYLIBDIR = ../../lib/${MACHTYPE}
 MYLIBS =  ${MYLIBDIR}/jkhgap.a ${MYLIBDIR}/jkweb.a
 
 A = hgLogin
 
 O = gbMembers.o $A.o
 
 include ../../inc/cgi_build_rules.mk
 
 compile: $O
 	${CC} -o $A${EXE} -g $O ${MYLIBS} ${L} 
 
 
 # gbMembers.c gbMembers.h: gbMembers.as
 #        autoSql gbMembers.as gbMembers -dbLink
 
 #init:
 #        hgsql hgcentraltest < gbMembers.sql
 #        hgsql hgcentraltest -e 'insert into gbMembers (userName,
 #        realName,password,email,lastUse,activated,dateAuthenticated) values ("hgenecat","Fatcat Gene", "<hashed password here>","cat@xyz.edu", NOW(),"Y",NOW());'