11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/hg/pslCluster/makefile src/hg/pslCluster/makefile
index 889dd5d..ad475d3 100644
--- src/hg/pslCluster/makefile
+++ src/hg/pslCluster/makefile
@@ -1,19 +1,20 @@
+kentSrc = ../..
 include ../../inc/common.mk
 
 L += -lm
 MYLIBDIR = ../../lib/${MACHTYPE}
 MYLIBS =  ${MYLIBDIR}/jkhgap.a ${MYLIBDIR}/jkweb.a
 CFLAGS= -ggdb
 
 O = pslCluster.o
 
 pslCluster: $O ${MYLIBS}
 	${CC} ${CFLAGS} ${COPT} -o ${BINDIR}/pslCluster $O ${MYLIBS} $L
 #	${STRIP} ${BINDIR}/pslCluster${EXE}
 
 pslMaxMap: pslMaxMap.o ${MYLIBS}
 	${CC} ${CFLAGS} ${COPT} -o ${BINDIR}/pslMaxMap pslMaxMap.o ${MYLIBS} $L
 #	${STRIP} ${BINDIR}/pslCluster${EXE}
 
 clean:
 	rm -f $O