11e45667d4e291b3038ccda729a1cdf5bcaf004a braney Mon Jul 11 15:46:54 2016 -0700 incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX defines, modify a bunch of makefiles to include kentSrc variable pointing to top of the tree. diff --git src/hg/pslMaxMap/makefile src/hg/pslMaxMap/makefile index e69d0e2..852a729 100644 --- src/hg/pslMaxMap/makefile +++ src/hg/pslMaxMap/makefile @@ -1,15 +1,16 @@ +kentSrc = ../.. include ../../inc/common.mk L += -lm MYLIBDIR = ../../lib/${MACHTYPE} MYLIBS = ${MYLIBDIR}/jkhgap.a ${MYLIBDIR}/jkweb.a O = pslMaxMap.o pslMaxMap: $O ${MYLIBS} ${CC} ${CFLAGS} ${COPT} -o ${BINDIR}/pslMaxMap $O ${MYLIBS} $L ${STRIP} ${BINDIR}/pslMaxMap${EXE} clean: rm -f $O