11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/hg/pslToPileup/makefile src/hg/pslToPileup/makefile
index f868d29..8f3da17 100644
--- src/hg/pslToPileup/makefile
+++ src/hg/pslToPileup/makefile
@@ -1,19 +1,20 @@
+kentSrc = ../..
 include ../../inc/common.mk
 
 
 L += -lm
 MYLIBDIR = ../../lib/$(MACHTYPE)
 MYLIBS =  $(MYLIBDIR)/jkweb.a
 
 A = pslToPileup
 O = $(A).o 
 
 $(A): $O $(MYLIBS)
 	${CC} ${COPT} ${CFLAGS} -o ${BINDIR}/$(A) $O $(MYLIBS) $L
 	${STRIP} ${BINDIR}/$(A)${EXE}
 
 lib:
 	cd ../../lib && ${MAKE}
 
 clean::
 	rm -f ${O}