11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/hg/qaAgpToQacIdx/makefile src/hg/qaAgpToQacIdx/makefile
index 986b826..7836831 100644
--- src/hg/qaAgpToQacIdx/makefile
+++ src/hg/qaAgpToQacIdx/makefile
@@ -1,14 +1,15 @@
+kentSrc = ../..
 include ../../inc/common.mk
 
 L += -lm
 MYLIBDIR = ../../lib/${MACHTYPE}
 MYLIBS = $(MYLIBDIR)/jkhgap.a ${MYLIBDIR}/jkweb.a
 
 O = qaAgpToQacIdx.o
 
 qaAgpToQacIdx: $O ${MYLIBS}
 	${CC} ${COPT} -o ${BINDIR}/qaAgpToQacIdx $O ${MYLIBS} $L
 	${STRIP} ${BINDIR}/qaAgpToQacIdx${EXE}
 
 clean:
 	rm -f $O