11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/hg/randomPlacement/makefile src/hg/randomPlacement/makefile
index a7871bc..943357b 100644
--- src/hg/randomPlacement/makefile
+++ src/hg/randomPlacement/makefile
@@ -1,21 +1,22 @@
+kentSrc = ../..
 include ../../inc/common.mk
 
 L += -lm ${MYSQLLIBS}
 MYLIBDIR = ../../lib/${MACHTYPE}
 MYLIBS =  ${MYLIBDIR}/jkhgap.a ${MYLIBDIR}/jkweb.a
 
 A = randomPlacement
 
 O = randomPlacement.o
 
 ${A}: ${O} $(MYLIBS)
 	${CC} ${COPT} ${CFLAGS} -o ${BINDIR}/${A}${EXE} \
 		$O ${MYLIBS} ${L} 
 	${STRIP} ${BINDIR}/${A}${EXE}
 
 compile: $O 
 	${CC} -g $O ${MYLIBS} ${L} 
 	mv ${AOUT} $A${EXE}
 
 clean::
 	rm -f ${O} ${A}${EXE} ${AOUT}