11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/hg/rnaStructure/makefile src/hg/rnaStructure/makefile
index 542f41a..25b22b8 100644
--- src/hg/rnaStructure/makefile
+++ src/hg/rnaStructure/makefile
@@ -1,25 +1,26 @@
+kentSrc = ../..
 include ../../inc/common.mk
 # Build all directories in makeDb 
 
 # List of directories to build
 DIRS = \
     hgLoadRnaFold \
     rnaFoldBig \
     utrFa 
 
 USE_DIRS = ${DIRS}
 
 all: $(USE_DIRS:%=%.all)
 
 %.all:
 	( cd $* && echo $* && ${MAKE} )
 
 clean:: $(USE_DIRS:%=%.clean)
 
 %.clean::
 	( cd $* && echo $* && ${MAKE} clean )
 
 compile:: $(USE_DIRS:%=%.compile)
 
 %.compile::
 	( cd $* && echo $* && ${MAKE} compile )