11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/hg/test/makefile src/hg/test/makefile
index e5dbc9a..78ab82b 100644
--- src/hg/test/makefile
+++ src/hg/test/makefile
@@ -1,19 +1,20 @@
+kentSrc = ../..
 include ../../inc/common.mk
 
 L += ${MYSQLLIBS} -lm
 MYLIBDIR = ../../lib/${MACHTYPE}
 MYLIBS =  ${MYLIBDIR}/jkhgap.a ${MYLIBDIR}/jkweb.a
 
 O = test.o
 
 test: ${O}
 	${CC} ${COPT} -o test $O ${MYLIBS} $L
 	@./test
 	@rm -f test
 
 compile: ${O}
 	${CC} ${COPT} -o test $O ${MYLIBS} $L
 	@./test
 
 clean::
 	rm -f test ${O}