11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/hg/zfishBacClonesandSts/makefile src/hg/zfishBacClonesandSts/makefile
index 806dad2..1f0b49e 100644
--- src/hg/zfishBacClonesandSts/makefile
+++ src/hg/zfishBacClonesandSts/makefile
@@ -1,30 +1,31 @@
+kentSrc = ../..
 include ../../inc/common.mk
 
 L += ${MYSQLLIBS} -lm 
 MYLIBDIR = ../../lib/${MACHTYPE}
 MYLIBS =  ${MYLIBDIR}/jkhgap.a ${MYLIBDIR}/jkweb.a
 #COPT=-ggdb
 
 A = zfishBacClonesandSts
 
 O = $A.o
 
 compile: $O 
 	${CC} ${COPT} ${CFLAGS} $O ${MYLIBS} ${L} 
 	mv ${AOUT} $A${EXE}
 	${STRIP} $A${EXE}
 	chmod a+rx $A
 	cp $A ${BINDIR}
 
 debug: $O
 	${CC} ${COPT} ${CFLAGS} $O ${MYLIBS} ${L} 
 	mv ${AOUT} $A${EXE}
 
 lib:
 	cd ../../lib && ${MAKE}
 
 tags:  
 	ctags *.c ../lib/*.c ../inc/*.h ../../lib/*.c ../../inc/*.h
 
 clean::
 	rm -f zfishBacClonesandSts ${O}