11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/isPcr/webPcr/makefile src/isPcr/webPcr/makefile
index a753003..19b5a3b 100644
--- src/isPcr/webPcr/makefile
+++ src/isPcr/webPcr/makefile
@@ -1,27 +1,28 @@
+kentSrc = ../..
 include ../../inc/common.mk
 
 L += -lm $(SOCKETLIB)
 MYLIBDIR = ../../lib/${MACHTYPE}
 MYLIBS =  ${MYLIBDIR}/jkOwnLib.a ${MYLIBDIR}/jkweb.a
 
 O = webPcr.o
 
 webPcr: $O ${MYLIBS}
 	${CC} ${COPT} -o webPcr $O ${MYLIBS} $L
 	${STRIP} webPcr${EXE}
 
 clean:
 	rm -f $O webPcr
 
 installOsX: webPcr
 	cp webPcr /Library/WebServer/CGI-Executables
 	cp webPcr.cfg /Library/WebServer/CGI-Executables
 
 installUcsc: webPcr
 	cp webPcr /usr/local/apache/cgi-bin-$(USER)
 	cp webPcr.cfg /usr/local/apache/cgi-bin-$(USER)
 
 installAlpha: webPcr
 	cp webPcr /usr/local/apache/cgi-bin
 	cp webPcr.cfg /usr/local/apache/cgi-bin