11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/olly/makefile src/olly/makefile
index 62a7528..95b1c02 100644
--- src/olly/makefile
+++ src/olly/makefile
@@ -1,15 +1,16 @@
+kentSrc = ..
 include ../inc/common.mk
 
 L += -lm
 MYLIBDIR = ../lib/$(MACHTYPE)
 MYLIBS =  $(MYLIBDIR)/jkhgap.a $(MYLIBDIR)/jkweb.a
 
 O = olly.o
 
 olly: $O $(MYLIBS)
 #	${CC} ${COPT} ${CFLAGS} -o olly $O $(MYLIBS) $L
 	${CC} ${COPT} ${CFLAGS} -o ${BINDIR}/olly $O $(MYLIBS) $L
 #	${STRIP} ${BINDIR}/olly${EXE}
 
 clean::
 	rm -f ${O}