11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/oneShot/jksql/makefile src/oneShot/jksql/makefile
index 40d420d..8d0cb1f 100644
--- src/oneShot/jksql/makefile
+++ src/oneShot/jksql/makefile
@@ -1,11 +1,12 @@
+kentSrc = ../..
 include ../../inc/common.mk
 
 
 L += /usr/lib/mysql/libmysqlclient.a -lm
 O = jksql.o 
 
 jksql: $(O)
 	${CC} ${COPT} ${CFLAGS} -o jksql $O ../../lib/$(MACHTYPE)/jkweb.a $L
 
 clean::
 	rm -f ${O}