11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/oneShot/preProcGgfAndy/makefile src/oneShot/preProcGgfAndy/makefile
index 328965d3..37132d6 100644
--- src/oneShot/preProcGgfAndy/makefile
+++ src/oneShot/preProcGgfAndy/makefile
@@ -1,12 +1,13 @@
+kentSrc = ../..
 include ../../inc/common.mk
 
 MYLIBDIR = ../../lib/$(MACHTYPE)
 MYLIBS =  $(MYLIBDIR)/jkweb.a
 
 O = preProcGgfAndy.o
 
 preProcGgfAndy: $O 
 	gcc -o ${BINDIR}/preProcGgfAndy $O $(MYLIBS)
 
 clean::
 	rm -f ${O}