11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/parasol/lib/makefile src/parasol/lib/makefile
index e600e7f..15c9132 100644
--- src/parasol/lib/makefile
+++ src/parasol/lib/makefile
@@ -1,13 +1,14 @@
+kentSrc = ../..
 include ../../inc/common.mk
 
 O = broadData.o paraLib.o paraMessage.o machSpec.o jobResult.o
 
 ${MACHTYPE}/paralib.a: ${O} libdir
 	ar rcu ${MACHTYPE}/paralib.a ${O}
 	ranlib ${MACHTYPE}/paralib.a
 
 libdir::
 	${MKDIR} ${MACHTYPE}
 
 clean::
 	rm -f ${O}