11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/tracks/makefile src/tracks/makefile
index 2bf0e91..ce49663 100644
--- src/tracks/makefile
+++ src/tracks/makefile
@@ -1,42 +1,43 @@
+kentSrc = ..
 include ../inc/common.mk
 
 L += $(MYSQLLIBS) -lz -lm
 MYLIBDIR = ../lib/$(MACHTYPE)
 MYLIBS =  $(MYLIBDIR)/jkweb.a
 
 A = tracksWS120.exe
 
 O = tracks.o 
 
 compile: $O 
 	${CC} $O $(MYLIBS) $(L) 
 	mv ${AOUT} $A
 #${STRIP} $A
 	chmod a+rx $A
 
 my: compile
 	mv $A ${CGI_BIN}-$(USER)/$A
 
 mgsc: compile
 	mv $A ${CGI_BIN}-mgsc/$A
 
 alpha: compile
 	mv $A ${CGI_BIN}/$A
 
 beta: compile
 	mv $A ${CGI_BIN}-beta/$A
 
 
 install:	compile
 	${MKDIR} ${DESTDIR}${CGI_BIN}
 	mv $A ${DESTDIR}${CGI_BIN}/$A
 
 debug: $O
 	${CC} $O $(MYLIBS) $(L) 
 	mv ${AOUT} $A
 
 clean:
 	rm -f $O $A
 
 tags: 
 	ctags *.h *.c ../lib/*.c ../inc/*.h ../../lib/*.c ../../inc/*.h