11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/webBlat/makefile src/webBlat/makefile
index 6956ad5..5b321ea 100644
--- src/webBlat/makefile
+++ src/webBlat/makefile
@@ -1,27 +1,28 @@
+kentSrc = ..
 include ../inc/common.mk
 
 L += -lm $(SOCKETLIB)
 MYLIBDIR = ../lib/${MACHTYPE}
 MYLIBS =  ${MYLIBDIR}/jkOwnLib.a ${MYLIBDIR}/jkweb.a
 
 O = webBlat.o
 
 webBlat: $O ${MYLIBS}
 	${CC} ${COPT} -o webBlat $O ${MYLIBS} ${L}
 	${STRIP} webBlat${EXE}
 
 installOsX: webBlat
 	cp webBlat /Library/WebServer/CGI-Executables
 	cp webBlat.cfg /Library/WebServer/CGI-Executables
 
 installUcsc: webBlat
 	cp webBlat /usr/local/apache/cgi-bin-$(USER)
 	cp webBlat.cfg /usr/local/apache/cgi-bin-$(USER)
 
 installAlpha: webBlat
 	cp webBlat /usr/local/apache/cgi-bin
 	cp webBlat.cfg /usr/local/apache/cgi-bin
 
 clean:
 	rm -f $O webBlat