11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/xenoAli/xaShow/makefile src/xenoAli/xaShow/makefile
index 7540de4..f04ad33 100644
--- src/xenoAli/xaShow/makefile
+++ src/xenoAli/xaShow/makefile
@@ -1,14 +1,15 @@
+kentSrc = ../..
 include ../../inc/common.mk
 
 
 O = xaShow.o 
 
 xaShow.exe: $(O)
 	${CC} ${COPT} ${CFLAGS} $O ../../lib/$(MACHTYPE)/jkweb.a ${L} -lm
 	mv ${AOUT} xaShow.exe
 	chmod a+rx xaShow.exe
 	chmod g-w xaShow.exe
 	mv xaShow.exe $(HOME)/.html/cgi-bin
 
 clean::
 	rm -f ${O}