6d3019aadc40b26d64a8e3191fca8084a8055d67 hiram Thu Jul 14 11:31:31 2016 -0700 correct option processing for new trf v4.09 options refs #17580 diff --git src/hg/trfBig/trfBig.c src/hg/trfBig/trfBig.c index 3ff49af..29407b1 100644 --- src/hg/trfBig/trfBig.c +++ src/hg/trfBig/trfBig.c @@ -282,26 +282,23 @@ } if (!keep) { sprintf(trfTemp, "%s*", tempFile); removeWild(trfTemp); } } int main(int argc, char *argv[]) /* Process command line. */ { optionInit(&argc, argv, optionSpecs); if (argc != 3) usage(); trf409_l = optionInt("l", trf409_l); -if (trf409_l > 0) - trfExe = optionVal("trf.4.09", trfExe); -else trfExe = optionVal("trf", trfExe); doBed = optionExists("bed") || optionExists("bedAt"); tempDir = optionVal("tempDir", tempDir); maxPeriod = optionInt("maxPeriod", maxPeriod); keep = optionExists("keep"); trfBig(argv[1], argv[2]); return 0; }