1f6843501878c47ccba47c897077d2b5022f3e01
braney
  Sun Aug 14 15:55:17 2016 -0700
get bigPsl "alignment in window" to work

diff --git src/hg/hgc/hgc.h src/hg/hgc/hgc.h
index 9fe0f31..4b310d7 100644
--- src/hg/hgc/hgc.h
+++ src/hg/hgc/hgc.h
@@ -86,30 +86,34 @@
 void writeFramesetType();
 /* Write document type that shows a frame set, rather than regular HTML. */
 
 struct psl *getAlignments(struct sqlConnection *conn, char *table, char *acc);
 /* get the list of alignments for the specified acc */
 
 void printAlignmentsSimple(struct psl *pslList, int startFirst, char *hgcCommand,
                            char *typeName, char *itemIn);
 /* Print list of mRNA alignments, don't add extra textual link when
  * doesn't honor hgcCommand. */
 
 void printAlignments(struct psl *pslList,
 		     int startFirst, char *hgcCommand, char *typeName, char *itemIn);
 /* Print list of mRNA alignments. */
 
+void printAlignmentsExtra(struct psl *pslList,
+		     int startFirst, char *hgcCommand, char *hgcCommandInWindow, char *typeName, char *itemIn);
+/* Print list of mRNA alignments with special "in window" alignment function. */
+
 void showSomeAlignment(struct psl *psl, bioSeq *oSeq,
 		       enum gfType qType, int qStart, int qEnd,
 		       char *qName, int cdsS, int cdsE);
 /* Display protein or DNA alignment in a frame. */
 
 void linkToOtherBrowserTitle(char *otherDb, char *chrom, int start, int end, char *title);
 /* Make anchor tag to open another browser window with a title. */
 
 void linkToOtherBrowser(char *otherDb, char *chrom, int start, int end);
 /* Make anchor tag to open another browser window. */
 
 void printEntrezGeneUrl(FILE *f, int geneid);
 /* Print URL for Entrez browser on a gene details page. */
 
     void printEntrezPubMedUidUrl(FILE *f, int pmid);