481a1f2a2680f66d0e9948d9520ff8aaf6d9341b
max
  Thu Jul 28 10:37:34 2016 -0700
changed http links over to https for NCBI in extTools.ra, refs #17793

diff --git src/hg/hgTracks/extTools.ra src/hg/hgTracks/extTools.ra
index 6e4db98..ad23513 100644
--- src/hg/hgTracks/extTools.ra
+++ src/hg/hgTracks/extTools.ra
@@ -15,44 +15,44 @@
 # $position - current position, format chr:start-end
 # $halfLen - 1/2 of the current window size (for pointing external tools to the current center)
 
 # If something doesn't work, Hit "Esc" when the redirection takes place and append 
 # &debug=1
 # to the URL shown in the browser (it has hgt.redirectTool=xxx in it)
 # This will show all parameters sent to the external site and lets you edit them.
 
 # Note that these configuration entries do not have to be created manually
 # We have a tool "extToolsChromeParse" that can parse the Chrome debug
 # trace to create them automatically from a traced click on a link in Chrome
 # Run the tool "extToolsChromeParse" and look at its help message for details
 tool NCBIPrev
 shortLabel NCBI Map Viewer
 longLabel NCBI Genome Browser
-url http://www.ncbi.nlm.nih.gov/mapview/maps.cgi
+url https://www.ncbi.nlm.nih.gov/mapview/maps.cgi
 email info@ncbi.nlm.nih.gov
 onlyDbs hg19
 isHttpGet true
 param taxId $taxId
 param CHR $s
 param BEG $start1
 param END $]
 param build previous
 
 tool NCBI
 shortLabel NCBI Map Viewer
 longLabel NCBI Genome Browser
-url http://www.ncbi.nlm.nih.gov/mapview/maps.cgi
+url https://www.ncbi.nlm.nih.gov/mapview/maps.cgi
 email info@ncbi.nlm.nih.gov
 notDbs hg19
 isHttpGet true
 param taxId $taxId
 param CHR $s
 param BEG $start1
 param END $]
 
 tool ensemblArch
 shortLabel Ensembl
 longLabel Ensembl Genome Browser
 url http://dec2014.archive.ensembl.org/$n/contigview
 onlyDbs hg38
 email helpdesk@ensembl.org
 isHttpGet true
@@ -73,31 +73,31 @@
 
 tool primer3Plus
 shortLabel Primer3Plus
 longLabel Updated interface of the popular primer designer. Primers flank the nucleotide in the center of the screen.
 url http://primer3plus.com/cgi-bin/dev/primer3plus.cgi
 email server@untergasser.de
 maxSize 10000
 param GENBRO_RETURN_PATH $returnUrl
 param GENBRO_DB $db
 param GENBRO_POSITION $position
 param SEQUENCE_TEMPLATE $seq
 
 tool primerBlast
 shortLabel Primer-BLAST
 longLabel Primer3-based primer designer that also checks matches via NCBI BLAST
-url http://www.ncbi.nlm.nih.gov/tools/primer-blast/primertool.cgi
+url https://www.ncbi.nlm.nih.gov/tools/primer-blast/primertool.cgi
 email info@ncbi.nlm.nih.gov
 maxSize 50000
 param EXCLUDED_REGIONS 
 param PRIMER_INTERNAL_OLIGO_MAX_GC 80.0
 param LOW_COMPLEXITY_FILTER on
 param SELF_ANY 8.00
 param SALT_FORMULAR 1
 param PRIMER_INTERNAL_OLIGO_OPT_TM 60.0
 param PRIMER_INTERNAL_OLIGO_MIN_SIZE 18
 param PRIMER_NUM_RETURN 10
 param OVERLAP_3END 4
 param HITSIZE 50000
 param PRIMER_PAIR_MAX_COMPL_ANY_TH 45.0
 param PRIMER_INTERNAL_OLIGO_OPT_GC_PERCENT 50
 param PRIMER_MAX_HAIRPIN_TH 24.0