06598725532a350f0a2aee1c5fe67cfd338e9b5b
braney
Wed Aug 31 13:26:17 2016 -0700
some fixes for NCBI RefSeq track
diff --git src/hg/hgc/hgc.c src/hg/hgc/hgc.c
index 017d98e..555ac15 100644
--- src/hg/hgc/hgc.c
+++ src/hg/hgc/hgc.c
@@ -11801,34 +11801,37 @@
printf("
mRNA/Genomic Alignments
");
printAlignments(pslList, start, "htcCdnaAli", "ncbiRefSeqPsl", itemName);
}
else
{
printf ("there is NO alignment for %s
\n", itemName);
}
htmlHorizontalLine();
if (!sameString(tdb->track, "ncbiRefSeqPsl"))
showGenePos(itemName, tdb);
printf("Links to sequence:
\n");
printf("\n");
+if (differentWord("n/a", nrl->protAcc))
+ {
puts("- \n");
hgcAnchorSomewhere("htcTranslatedProtein", nrl->protAcc, "ncbiRefSeqPepTable", seqName);
printf("Predicted Protein \n");
puts("
\n");
+ }
puts("- \n");
hgcAnchorSomewhere("ncbiRefSeqSequence", itemName, "ncbiRefSeqPsl", seqName);
printf("%s may be different from the genomic sequence.\n",
"Predicted mRNA");
puts("
\n");
puts("- \n");
hgcAnchorSomewhere("getDna", itemName, tdb->track, seqName);
printf("Genomic Sequence from assembly\n");
puts("
\n");
printf("
\n");
printTrackHtml(tdb);
hFreeConn(&conn);
}