9e2a8a0b99b50e87a71b0bf1f9f6df74f06c708e kate Mon Aug 15 12:48:20 2016 -0700 Finish up ASE tracks. Polish hub for release. refs #17885 diff --git src/hg/inc/gtexAse.h src/hg/inc/gtexAse.h index b4fa94e..05cd786 100644 --- src/hg/inc/gtexAse.h +++ src/hg/inc/gtexAse.h @@ -12,31 +12,31 @@ struct gtexAse /* BED9+ with additional fields for ASE, coverage, and sample count */ { struct gtexAse *next; /* Next in singly linked list. */ char *chrom; /* Reference sequence chromosome or scaffold */ unsigned chromStart; /* Start position in chromosome */ unsigned chromEnd; /* End position in chromosome */ char *name; /* SNP Id */ unsigned score; /* Score from 0-1000; derived from median ASE level */ char strand[2]; /* n/a */ unsigned thickStart; /* n/a */ unsigned thickEnd; /* n/a */ unsigned itemRgb; /* Color by binned ASE value (none, moderate, strong) */ float medianASE; /* Allelic imbalance (0-.5) median */ - float coverage; /* RNA-seq reads overlapping this position */ + float coverage; /* RNA-seq reads overlapping this position (median) */ unsigned samples; /* Sample count */ unsigned donors; /* Donor count */ float minASE; /* Minimum ASE */ float q1ASE; /* Q1 ASE */ float q3ASE; /* Q3 ASE */ float maxASE; /* Maximum ASE */ float stdASE; /* ASE standard deviation */ }; void gtexAseStaticLoad(char **row, struct gtexAse *ret); /* Load a row from gtexAse table into ret. The contents of ret will * be replaced at the next call to this function. */ struct gtexAse *gtexAseLoadByQuery(struct sqlConnection *conn, char *query); /* Load all gtexAse from table that satisfy the query given.