c7723adc566681d4f69232076df356c36aa5a1cf max Fri Sep 9 16:03:22 2016 -0700 adding first versin of pipeline for crispr tracks and trackDb statements supporting external extra fields, refs #17235 diff --git src/utils/makefile src/utils/makefile index 530253f..3edd8b2 100644 --- src/utils/makefile +++ src/utils/makefile @@ -148,31 +148,36 @@ agpToLift \ bedCollapse.pl \ bedSingleCover.pl \ iSync \ lodToBedScore \ mkMafFrames.pl \ uniprotLift \ bedFixBlockOverlaps \ apacheLogParse \ extToolsChromeParse \ patSeqFilterBulkAndAnnotate \ uniprotToTab \ patSeqSummarizeDocs \ pslProtCnv \ pslSameGene \ - matrixMerge + matrixMerge \ + bedOverlapMerge \ + tabRepl \ + doLocusName \ + bedBetween + # List of all directories to build ALL_APPS = $(UTILS_APPLIST) $(UCSC_APPS) # all: builds all utilities here all: $(ALL_APPS:%=%.all) %.all: cd $* && echo $* && $(MAKE) # userAppsB: builds the user application specific programs # it would have been nice to be able to use the target name 'userApps' # here, but there is a directory by that name, and thus it always exists