cfb63bd22072217bc504665d8abeb5f81587c8d7
hiram
  Thu Sep 15 18:09:14 2016 -0700
better to call chromXref as chromAlias and now is a three column table with primary key refs #18027

diff --git src/hg/lib/chromXref.c src/hg/lib/chromXref.c
deleted file mode 100644
index bdc50e7..0000000
--- src/hg/lib/chromXref.c
+++ /dev/null
@@ -1,180 +0,0 @@
-/* chromXref.c was originally generated by the autoSql program, which also 
- * generated chromXref.h and chromXref.sql.  This module links the database and
- * the RAM representation of objects. */
-
-#include "common.h"
-#include "linefile.h"
-#include "dystring.h"
-#include "jksql.h"
-#include "chromXref.h"
-
-
-
-char *chromXrefCommaSepFieldNames = "ucsc,refseq,genbank,ensembl";
-
-void chromXrefStaticLoad(char **row, struct chromXref *ret)
-/* Load a row from chromXref table into ret.  The contents of ret will
- * be replaced at the next call to this function. */
-{
-
-ret->ucsc = row[0];
-ret->refseq = row[1];
-ret->genbank = row[2];
-ret->ensembl = row[3];
-}
-
-struct chromXref *chromXrefLoad(char **row)
-/* Load a chromXref from row fetched with select * from chromXref
- * from database.  Dispose of this with chromXrefFree(). */
-{
-struct chromXref *ret;
-
-AllocVar(ret);
-ret->ucsc = cloneString(row[0]);
-ret->refseq = cloneString(row[1]);
-ret->genbank = cloneString(row[2]);
-ret->ensembl = cloneString(row[3]);
-return ret;
-}
-
-struct chromXref *chromXrefLoadAll(char *fileName) 
-/* Load all chromXref from a whitespace-separated file.
- * Dispose of this with chromXrefFreeList(). */
-{
-struct chromXref *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[4];
-
-while (lineFileRow(lf, row))
-    {
-    el = chromXrefLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct chromXref *chromXrefLoadAllByChar(char *fileName, char chopper) 
-/* Load all chromXref from a chopper separated file.
- * Dispose of this with chromXrefFreeList(). */
-{
-struct chromXref *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[4];
-
-while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
-    {
-    el = chromXrefLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct chromXref *chromXrefCommaIn(char **pS, struct chromXref *ret)
-/* Create a chromXref out of a comma separated string. 
- * This will fill in ret if non-null, otherwise will
- * return a new chromXref */
-{
-char *s = *pS;
-
-if (ret == NULL)
-    AllocVar(ret);
-ret->ucsc = sqlStringComma(&s);
-ret->refseq = sqlStringComma(&s);
-ret->genbank = sqlStringComma(&s);
-ret->ensembl = sqlStringComma(&s);
-*pS = s;
-return ret;
-}
-
-void chromXrefFree(struct chromXref **pEl)
-/* Free a single dynamically allocated chromXref such as created
- * with chromXrefLoad(). */
-{
-struct chromXref *el;
-
-if ((el = *pEl) == NULL) return;
-freeMem(el->ucsc);
-freeMem(el->refseq);
-freeMem(el->genbank);
-freeMem(el->ensembl);
-freez(pEl);
-}
-
-void chromXrefFreeList(struct chromXref **pList)
-/* Free a list of dynamically allocated chromXref's */
-{
-struct chromXref *el, *next;
-
-for (el = *pList; el != NULL; el = next)
-    {
-    next = el->next;
-    chromXrefFree(&el);
-    }
-*pList = NULL;
-}
-
-void chromXrefOutput(struct chromXref *el, FILE *f, char sep, char lastSep) 
-/* Print out chromXref.  Separate fields with sep. Follow last field with lastSep. */
-{
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->ucsc);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->refseq);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->genbank);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->ensembl);
-if (sep == ',') fputc('"',f);
-fputc(lastSep,f);
-}
-
-void chromXrefJsonOutput(struct chromXref *el, FILE *f) 
-/* Print out chromXref in JSON format. */
-{
-fputc('{',f);
-fputc('"',f);
-fprintf(f,"ucsc");
-fputc('"',f);
-fputc(':',f);
-fputc('"',f);
-fprintf(f, "%s", el->ucsc);
-fputc('"',f);
-fputc(',',f);
-fputc('"',f);
-fprintf(f,"refseq");
-fputc('"',f);
-fputc(':',f);
-fputc('"',f);
-fprintf(f, "%s", el->refseq);
-fputc('"',f);
-fputc(',',f);
-fputc('"',f);
-fprintf(f,"genbank");
-fputc('"',f);
-fputc(':',f);
-fputc('"',f);
-fprintf(f, "%s", el->genbank);
-fputc('"',f);
-fputc(',',f);
-fputc('"',f);
-fprintf(f,"ensembl");
-fputc('"',f);
-fputc(':',f);
-fputc('"',f);
-fprintf(f, "%s", el->ensembl);
-fputc('"',f);
-fputc('}',f);
-}
-
-/* -------------------------------- End autoSql Generated Code -------------------------------- */
-