Commits for braney

v339_base to v340_preview (2016-09-26 to 2016-10-03) v340

7ac8a6d873de1fdbe7f7373cf2dc97e7b094eef5 Mon Sep 26 17:54:12 2016 -0700

• repair pfam tracks
  
  • src/hg/makeDb/doc/dm6.txt - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/doc/ucscGenes/hg18.ucscGenes11.csh - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/doc/ucscGenes/hg19.ucscGenes14.csh - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/doc/ucscGenes/hg38.ucscGenes17.sh - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/ucscGenes/mm10.ucscGenes16.csh - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/doc/ucscGenes/mm9.ucscGenes12.csh - lines changed 2, context: html, text, full: html, text

3b70ea59a370e40497a20d96b18908345f5f597a Tue Sep 27 11:53:26 2016 -0700

• add disconnect button to group headers that are made from hubs
  
  • src/hg/hgTracks/hgTracks.c - lines changed 14, context: html, text, full: html, text

7b89c304567373d9f309086a965706dcaa2a7670 Wed Sep 28 15:49:42 2016 -0700

• if there is a maf with just the default species, use that instead of the
  main maf
  
  • src/hg/hgTracks/wigMafTrack.c - lines changed 19, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg38/multiz100way.txt - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.100way.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 2, context: html, text, full: html, text

0268341f3b2ad1ed31c6dfee5a23f3035355f1ea Wed Sep 28 18:41:27 2016 -0700

• use default maf in dense and squish modes
  
  • src/hg/hgTracks/wigMafTrack.c - lines changed 7, context: html, text, full: html, text