All File Changes

v340_base to v341_preview (2016-10-17 to 2016-10-24) v341

• src/hg/hgc/hgc.c
  • lines changed 5, context: html, text, full: html, text
    193841571306bec9ee747f98d05904116dc412b8 Tue Oct 18 15:01:14 2016 -0700
    adding Gene Tree link refs #18240
• src/hg/htdocs/FAQ/FAQreleases.html
  • lines changed 5, context: html, text, full: html, text
    5612a175aefd56f267c0261ef6b24668773e6df0 Fri Oct 21 13:33:25 2016 -0700
    Staging indexNews announcement and adding new primates to releases, various rms
• src/hg/htdocs/goldenPath/credits.html
  • lines changed 20, context: html, text, full: html, text
    6fc7b48ab93bc36b1d5bff2f1de9c1bdd9b0869a Fri Oct 21 15:32:13 2016 -0700
    Added panTro5 and gorGor5 to the credits page
  • lines changed 55, context: html, text, full: html, text
    043220abba937b4f12311a959e993ccc08fac5fd Fri Oct 21 15:59:36 2016 -0700
    Adding green monkey credits, refs #11172
  • lines changed 1, context: html, text, full: html, text
    168fa72f8bdcac81825519882df8af2703760501 Fri Oct 21 16:15:16 2016 -0700
    Fixing chimp credits
  • lines changed 2, context: html, text, full: html, text
    f202b22635754813c820a7d625860ea10a1a7152 Mon Oct 24 08:16:19 2016 -0700
    added panTro5 to credits.html ref #17817
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 60, context: html, text, full: html, text
    23da554b7aefe6aa14ae840f35ed3608e2f21112 Fri Oct 21 15:40:50 2016 -0700
    Added green monkey,chimp and gorilla to newsarch.html
  • lines changed 2, context: html, text, full: html, text
    459eb25eb2b35676bb5802a55b83c4532debe1e0 Mon Oct 24 08:41:31 2016 -0700
    Changing date of announcement to today
• src/hg/htdocs/index.html
  • lines changed 1, context: html, text, full: html, text
    2b88c86f7daf4e025e76975554c81dab4dc325b0 Wed Oct 19 13:28:28 2016 -0700
    Adding a reference note about helix picture from email thread with Ann/Bob/Jim
  • lines changed 2, context: html, text, full: html, text
    9aa752f9fe8f87e3e19e86369f055d848737b5f6 Wed Oct 19 13:36:53 2016 -0700
    Adding a reference note about the correct helix picture from email thread with Ann/Bob/Jim
• src/hg/htdocs/indexNews.html
  • lines changed 12, context: html, text, full: html, text
    5612a175aefd56f267c0261ef6b24668773e6df0 Fri Oct 21 13:33:25 2016 -0700
    Staging indexNews announcement and adding new primates to releases, various rms
  • lines changed 2, context: html, text, full: html, text
    459eb25eb2b35676bb5802a55b83c4532debe1e0 Mon Oct 24 08:41:31 2016 -0700
    Changing date of announcement to today
• src/hg/htdocs/training/index.html
  • lines changed 30, context: html, text, full: html, text
    f5fd02909f5a085d0c2e20d5383b038140b83dcd Wed Oct 19 10:15:48 2016 -0700
    dropping two completed workshops, adding PAG, Mt Sinai, correcting date of Greece workshop to November
  • lines changed 1, context: html, text, full: html, text
    af2e91c1efa0304355666002defef5747b1af8f5 Wed Oct 19 10:27:58 2016 -0700
    fixed overlooked broken email address
• src/hg/inc/hdb.h
  • lines changed 38, context: html, text, full: html, text
    76a4d66b576dee44a14c4e73cd2bf18f4d0a812a Fri Oct 21 12:43:37 2016 -0700
    Removing prototypes for previously removed functions, refs #14715
• src/hg/lib/hdb.c
  • lines changed 4, context: html, text, full: html, text
    76a4d66b576dee44a14c4e73cd2bf18f4d0a812a Fri Oct 21 12:43:37 2016 -0700
    Removing prototypes for previously removed functions, refs #14715
• src/hg/lib/hgHgvs.c
  • lines changed 36, context: html, text, full: html, text
    c2d33a4ecdb13f97ae828bc7099280f89f1e5dbd Wed Oct 19 09:55:33 2016 -0700
    hgHgvs was assuming that refGene always exists, oops. hgHgvs was also assuming that db is a mysql database. Thanks Braney! refs #18240 note-5, note-9
• src/hg/makeDb/doc/makeEnsembl.txt
  • lines changed 147, context: html, text, full: html, text
    5cf201c547360e376edf3291ea1eb4053d28051d Tue Oct 18 14:36:35 2016 -0700
    ensGene v86 done refs #18240
• src/hg/makeDb/schema/all.joiner
  • lines changed 5, context: html, text, full: html, text
    463df8bbefae91f0ec29f298a00c0de53ce4ccaf Thu Oct 20 13:49:17 2016 -0700
    rule for chromAlias xref refs #18027 #18250
• src/hg/utils/automation/EnsGeneAutomate.pm
  • lines changed 1, context: html, text, full: html, text
    2028255de6b454a9ff60255e06c8aca0c7e01271 Mon Oct 17 14:01:13 2016 -0700
    correct galGal5 definitions for v86 definitions refs #18216
• src/hg/utils/hubToMetaRa/hubToMetaRa.c
  • lines changed 24, context: html, text, full: html, text
    9b542a3e6221b2d056a650180e3249c10bc58f66 Tue Oct 18 11:31:27 2016 -0700
    some tweaks to hubToMetaRa
• src/hg/utils/refSeqGet/tests/expected/basicListTest.gp
  • lines changed 1, context: html, text, full: html, text
    afb72bce142c167df3a3ed80f5f3fee2321b9bf8 Sat Oct 22 08:44:49 2016 -0700
    fix some genbank unit tests that broke because RefSeq changes
• src/hg/utils/refSeqGet/tests/expected/basicListTest.meta
  • lines changed 1, context: html, text, full: html, text
    afb72bce142c167df3a3ed80f5f3fee2321b9bf8 Sat Oct 22 08:44:49 2016 -0700
    fix some genbank unit tests that broke because RefSeq changes
• src/hg/utils/refSeqGet/tests/expected/basicListTest.psl
  • lines changed 1, context: html, text, full: html, text
    afb72bce142c167df3a3ed80f5f3fee2321b9bf8 Sat Oct 22 08:44:49 2016 -0700
    fix some genbank unit tests that broke because RefSeq changes
• src/hg/utils/refSeqGet/tests/expected/basicListTest.rna.fa
  • lines changed 61, context: html, text, full: html, text
    c299636e5376b2909bd6592267128dbe72d954a0 Tue Oct 18 07:56:34 2016 -0700
    fixed test results due to changed refseq
• src/lib/common.c
  • lines changed 20, context: html, text, full: html, text
    9b542a3e6221b2d056a650180e3249c10bc58f66 Tue Oct 18 11:31:27 2016 -0700
    some tweaks to hubToMetaRa
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 2, context: html, text, full: html, text
    cc13fc26a60de25ec0c20da7fa6cb5299c070126 Mon Oct 24 10:32:21 2016 -0700
    v341 preview2 refs #18185

• lines changed: 539
• files changed: 27