4dd0e74f2da650f4f41ccfc29fc18df024e303d9 braney Tue Nov 29 18:03:37 2016 -0800 get BLAT custom tracks to work on assembly hubs diff --git src/inc/twoBit.h src/inc/twoBit.h index 1d9b246..ecf1172 100644 --- src/inc/twoBit.h +++ src/inc/twoBit.h @@ -201,16 +201,19 @@ void twoBitSpecFree(struct twoBitSpec **specPtr); /* free a twoBitSpec object */ void twoBitOutNBeds(struct twoBitFile *tbf, char *seqName, FILE *outF); /* output a series of bed3's that enumerate the number of N's in a sequence*/ int twoBitSeqSizeNoNs(struct twoBitFile *tbf, char *seqName); /* return the length of the sequence, not counting N's */ long long twoBitTotalSizeNoN(struct twoBitFile *tbf); /* return the size of the all the sequence in file, not counting N's*/ boolean twoBitIsSequence(struct twoBitFile *tbf, char *chromName); /* Return TRUE if chromName is in 2bit file. */ + +struct hash *twoBitChromHash(char *fileName); +/* Build a hash of chrom names with their sizes. */ #endif /* TWOBIT_H */