Commits for hiram

v342_preview2 to v342_base (2016-11-28 to 2016-12-05) v342

8469c1e45df85e202bf1f019a04a99e29722c5f4 Tue Nov 29 14:34:51 2016 -0800

• the ncbiRefSeqOther track has become a bed12 type refs #13673
  • src/hg/hgTracks/simpleTracks.c - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 7, context: html, text, full: html, text

99d185b0f97224fba39b663efd48956478435450 Tue Nov 29 14:52:33 2016 -0800

• beware clicks on ncbiRefSeqOther now that it is bed12 refs #13673
  • src/hg/hgc/hgc.c - lines changed 1, context: html, text, full: html, text

71745030315fee014afc06044ffdd80f161b5eea Wed Nov 30 13:46:09 2016 -0800

• adding test example refs #13673
  • src/utils/bamToPsl/test/chr9.NM_020469.2.blat.bam - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/utils/bamToPsl/test/expectedOut.psl - lines changed 11, context: html, text, full: html, text
  • src/utils/bamToPsl/test/makefile - lines changed 22, context: html, text, full: html, text

6dd72064b6370ee77e722a1ce14d0579571d6635 Wed Nov 30 13:47:56 2016 -0800

• correct directory for tests example refs #13673
  • src/utils/bamToPsl/tests/chr9.NM_020469.2.blat.bam - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/utils/bamToPsl/tests/expectedOut.psl - lines changed 11, context: html, text, full: html, text
  • src/utils/bamToPsl/tests/makefile - lines changed 22, context: html, text, full: html, text

a60589da31cf9a3e7ce564259f767a1ab4377eda Wed Nov 30 13:48:58 2016 -0800

• correct directory for tests example refs #13673
  • src/utils/bamToPsl/test/chr9.NM_020469.2.blat.bam - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/utils/bamToPsl/test/expectedOut.psl - lines changed 11, context: html, text, full: html, text
  • src/utils/bamToPsl/test/makefile - lines changed 22, context: html, text, full: html, text

ce0d81954256642dd1ecc9b11d0128422dc6239f Mon Dec 5 10:02:00 2016 -0800

• v342 final build refs #18399
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 3, context: html, text, full: html, text

adadb2305d035d1b900ab1a1671e52a8b8d470a9 Mon Dec 5 10:02:47 2016 -0800

• New version number v342
  • src/hg/inc/versionInfo.h - lines changed 1, context: html, text, full: html, text