Commits for kent

v342_preview2 to v342_base (2016-11-28 to 2016-12-05) v342

dd838709307a153731b98039849a06234c8b76f9 Wed Nov 16 14:44:21 2016 -0800

• Adding vals option.
  • src/tagStorm/tagStormInfo/tagStormInfo.c - lines changed 31, context: html, text, full: html, text

c279488b70255e2a20a7f8dc689889133c13c290 Wed Nov 16 14:58:43 2016 -0800

• Adding -vals option and some more test cases.
  • src/tagStorm/tagStormInfo/tagStormInfo.c - lines changed 1, context: html, text, full: html, text
  • src/tagStorm/tagStormInfo/tests/expected.counts - lines changed 15, context: html, text, full: html, text
  • src/tagStorm/tagStormInfo/tests/expected.vals - lines changed 41, context: html, text, full: html, text
  • src/tagStorm/tagStormInfo/tests/makefile - lines changed 6, context: html, text, full: html, text

f5d49e1d728b1aeea2eff52761cb935dc0039ac7 Wed Nov 23 22:21:22 2016 -0800

• Making quotes in TSV quoted values be escaped by quotes as per spec, not by backslash as I assumed.
  • src/hg/cirm/cdw/lib/cdwLib.c - lines changed 21, context: html, text, full: html, text

681ec85f66ab8319dbe5f2656505a811cafe5924 Sat Dec 3 10:48:27 2016 -0800

• First cut of utility to turn tagStorm into a nice html page with a collapsable hierarchical list.
  • src/tagStorm/tagStormToHtml/tagStormToHtml.c - lines changed 245, context: html, text, full: html, text

22ac0afac6575bd3cae4686a413a6751232b179e Sat Dec 3 11:00:27 2016 -0800

• Moving some useful tagStorm stats function to library.
  • src/inc/tagStorm.h - lines changed 17, context: html, text, full: html, text
  • src/lib/tagStorm.c - lines changed 69, context: html, text, full: html, text
  • src/tagStorm/tagStormToHtml/tagStormToHtml.c - lines changed 68, context: html, text, full: html, text

8b045c2c9d61baeed4bee194e68355cd85121540 Sat Dec 3 11:06:02 2016 -0800

• Adding tagStormToHtml to higher level makefile.
  • src/tagStorm/makefile - lines changed 1, context: html, text, full: html, text

ea8b346da0e42a13b4c27219467362b3eecd653f Sun Dec 4 17:39:20 2016 -0800

• Added -embed option for making code to be embedded in other pages.
  • src/tagStorm/tagStormToHtml/tagStormToHtml.c - lines changed 34, context: html, text, full: html, text

f6aa9788d7ea71dbf2cdd8a22787700ee54a608d Sun Dec 4 17:40:19 2016 -0800

• Adding glioblastoma to disease controlled vocab, and making a new controlled vocab for fluidics_chip.
  • src/hg/cirm/cdw/lib/cdwValid.c - lines changed 7, context: html, text, full: html, text

856ef21f66c0afd117faa28903595d8deb7ed21b Sun Dec 4 17:42:16 2016 -0800

• Adding metadata tree to cdwDataset page. Restricting it and file hyperlink to cases where user has permissions to access dataset.
  • src/hg/cirm/cdw/cdwWebBrowse/cdwWebBrowse.c - lines changed 51, context: html, text, full: html, text

48b85ae522573bc45048c5cdc3b9d04157b3c66c Sun Dec 4 17:44:28 2016 -0800

• Bumping version number.
  • src/hg/cirm/cdw/cdwWebBrowse/cdwWebBrowse.c - lines changed 1, context: html, text, full: html, text
  • src/hg/cirm/cdw/cdwWebBrowse/version.doc - lines changed 3, context: html, text, full: html, text

256505d0b79d9755f767774e30767960b01868a9 Sun Dec 4 17:48:45 2016 -0800

• Oops, forgot to add makefile.
  • src/tagStorm/tagStormToHtml/makefile - lines changed 4, context: html, text, full: html, text