Commits for hiram
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v341_base to v342_preview (2016-11-07 to 2016-11-14) v342
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11aa0192c56aff4a890c19e4b07b9494c2f64385 Mon Nov 7 13:22:29 2016 -0800
- adding rnaSeqData trackDb.txt files refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_001624185.1_129S1_SvImJ_v1/rnaSeqData/GCA_001624185.1_129S1_SvImJ_v1.trackDb.txt - lines changed 287, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001624215.1_A_J_v1/rnaSeqData/GCA_001624215.1_A_J_v1.trackDb.txt - lines changed 287, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001624295.1_AKR_J_v1/rnaSeqData/GCA_001624295.1_AKR_J_v1.trackDb.txt - lines changed 77, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001624445.1_CAST_EiJ_v1/rnaSeqData/GCA_001624445.1_CAST_EiJ_v1.trackDb.txt - lines changed 437, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001624475.1_CBA_J_v1/rnaSeqData/GCA_001624475.1_CBA_J_v1.trackDb.txt - lines changed 77, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001624505.1_DBA_2J_v1/rnaSeqData/GCA_001624505.1_DBA_2J_v1.trackDb.txt - lines changed 77, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001624535.1_FVB_NJ_v1/rnaSeqData/GCA_001624535.1_FVB_NJ_v1.trackDb.txt - lines changed 65, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001624675.1_NOD_ShiLtJ_v1/rnaSeqData/GCA_001624675.1_NOD_ShiLtJ_v1.trackDb.txt - lines changed 311, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001624745.1_NZO_HlLtJ_v1/rnaSeqData/GCA_001624745.1_NZO_HlLtJ_v1.trackDb.txt - lines changed 287, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001624775.1_PWK_PhJ_v1/rnaSeqData/GCA_001624775.1_PWK_PhJ_v1.trackDb.txt - lines changed 425, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001624835.1_WSB_EiJ_v1/rnaSeqData/GCA_001624835.1_WSB_EiJ_v1.trackDb.txt - lines changed 383, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001624865.1_SPRET_EiJ_v1/rnaSeqData/GCA_001624865.1_SPRET_EiJ_v1.trackDb.txt - lines changed 143, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001632525.1_BALB_cJ_v1/rnaSeqData/GCA_001632525.1_BALB_cJ_v1.trackDb.txt - lines changed 77, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001632555.1_C57BL_6NJ_v1/rnaSeqData/GCA_001632555.1_C57BL_6NJ_v1.trackDb.txt - lines changed 77, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001632575.1_C3H_HeJ_v1/rnaSeqData/GCA_001632575.1_C3H_HeJ_v1.trackDb.txt - lines changed 77, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001632615.1_LP_J_v1/rnaSeqData/GCA_001632615.1_LP_J_v1.trackDb.txt - lines changed 65, context: html, text, full: html, text
15dd16e90158f2281b51f8b2874e56841c6cb44d Mon Nov 7 14:36:41 2016 -0800
- adding mouse SNPs from mouse strain comparison project refs #18305
- src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra - lines changed 8, context: html, text, full: html, text
5ce805db07f699824d3050069a999128f52e1ea8 Tue Nov 8 14:39:02 2016 -0800
- updates from Ian for trackDb settings refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_001624185.1_129S1_SvImJ_v1/rnaSeqData/GCA_001624185.1_129S1_SvImJ_v1.trackDb.txt - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001624215.1_A_J_v1/rnaSeqData/GCA_001624215.1_A_J_v1.trackDb.txt - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001624295.1_AKR_J_v1/rnaSeqData/GCA_001624295.1_AKR_J_v1.trackDb.txt - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001624445.1_CAST_EiJ_v1/rnaSeqData/GCA_001624445.1_CAST_EiJ_v1.trackDb.txt - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001624475.1_CBA_J_v1/rnaSeqData/GCA_001624475.1_CBA_J_v1.trackDb.txt - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001624505.1_DBA_2J_v1/rnaSeqData/GCA_001624505.1_DBA_2J_v1.trackDb.txt - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001624535.1_FVB_NJ_v1/rnaSeqData/GCA_001624535.1_FVB_NJ_v1.trackDb.txt - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001624675.1_NOD_ShiLtJ_v1/rnaSeqData/GCA_001624675.1_NOD_ShiLtJ_v1.trackDb.txt - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001624745.1_NZO_HlLtJ_v1/rnaSeqData/GCA_001624745.1_NZO_HlLtJ_v1.trackDb.txt - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001624775.1_PWK_PhJ_v1/rnaSeqData/GCA_001624775.1_PWK_PhJ_v1.trackDb.txt - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001624835.1_WSB_EiJ_v1/rnaSeqData/GCA_001624835.1_WSB_EiJ_v1.trackDb.txt - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001624865.1_SPRET_EiJ_v1/rnaSeqData/GCA_001624865.1_SPRET_EiJ_v1.trackDb.txt - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001632525.1_BALB_cJ_v1/rnaSeqData/GCA_001632525.1_BALB_cJ_v1.trackDb.txt - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001632555.1_C57BL_6NJ_v1/rnaSeqData/GCA_001632555.1_C57BL_6NJ_v1.trackDb.txt - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001632575.1_C3H_HeJ_v1/rnaSeqData/GCA_001632575.1_C3H_HeJ_v1.trackDb.txt - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001632615.1_LP_J_v1/rnaSeqData/GCA_001632615.1_LP_J_v1.trackDb.txt - lines changed 3, context: html, text, full: html, text
bf031e720df8cec4440ba118db350750c859e999 Tue Nov 8 14:41:46 2016 -0800
- install rules for rnaSeq data html and trackDb refs #13553
- src/hg/makeDb/doc/mouseStrains/makefile - lines changed 18, context: html, text, full: html, text
b35995a8ba449a50f4a16131fe2e32edb27a3166 Thu Nov 10 10:48:06 2016 -0800
- update from Michael Hiller refs #17286
- src/hg/mouseStuff/chainCleaner/chainCleaner.c - lines changed 3, context: html, text, full: html, text
626f0e5be4bae57507e0a042b32bfd9e2cab64de Thu Nov 10 15:31:56 2016 -0800
- cactus trackDb with chrom alias refs #13553
- src/hg/makeDb/doc/mouseStrains/GCA_001624185.1_129S1_SvImJ_v1/GCA_001624185.1_129S1_SvImJ_v1.cactus.trackDb.txt - lines changed 165, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001624215.1_A_J_v1/GCA_001624215.1_A_J_v1.cactus.trackDb.txt - lines changed 165, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001624295.1_AKR_J_v1/GCA_001624295.1_AKR_J_v1.cactus.trackDb.txt - lines changed 165, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001624445.1_CAST_EiJ_v1/GCA_001624445.1_CAST_EiJ_v1.cactus.trackDb.txt - lines changed 165, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001624475.1_CBA_J_v1/GCA_001624475.1_CBA_J_v1.cactus.trackDb.txt - lines changed 165, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001624505.1_DBA_2J_v1/GCA_001624505.1_DBA_2J_v1.cactus.trackDb.txt - lines changed 165, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001624535.1_FVB_NJ_v1/GCA_001624535.1_FVB_NJ_v1.cactus.trackDb.txt - lines changed 165, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001624675.1_NOD_ShiLtJ_v1/GCA_001624675.1_NOD_ShiLtJ_v1.cactus.trackDb.txt - lines changed 165, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001624745.1_NZO_HlLtJ_v1/GCA_001624745.1_NZO_HlLtJ_v1.cactus.trackDb.txt - lines changed 165, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001624775.1_PWK_PhJ_v1/GCA_001624775.1_PWK_PhJ_v1.cactus.trackDb.txt - lines changed 165, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001624835.1_WSB_EiJ_v1/GCA_001624835.1_WSB_EiJ_v1.cactus.trackDb.txt - lines changed 165, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001624865.1_SPRET_EiJ_v1/GCA_001624865.1_SPRET_EiJ_v1.cactus.trackDb.txt - lines changed 165, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001632525.1_BALB_cJ_v1/GCA_001632525.1_BALB_cJ_v1.cactus.trackDb.txt - lines changed 165, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001632555.1_C57BL_6NJ_v1/GCA_001632555.1_C57BL_6NJ_v1.cactus.trackDb.txt - lines changed 165, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001632575.1_C3H_HeJ_v1/GCA_001632575.1_C3H_HeJ_v1.cactus.trackDb.txt - lines changed 165, context: html, text, full: html, text
- src/hg/makeDb/doc/mouseStrains/GCA_001632615.1_LP_J_v1/GCA_001632615.1_LP_J_v1.cactus.trackDb.txt - lines changed 165, context: html, text, full: html, text
49d55b9f5352a988c08588424eb2e256cbb301a7 Thu Nov 10 15:33:48 2016 -0800
- allow chrom trix file index to change chr names from hal file into chr names in ucsc browser refs #13553
- src/hg/hgTracks/snakeTrack.c - lines changed 29, context: html, text, full: html, text
e5892ec7dcef2c52f00f4983a23c23352d154d43 Thu Nov 10 15:40:47 2016 -0800
- adding halSnake to tagTypes refs #13553
- src/hg/makeDb/trackDb/tagTypes.tab - lines changed 2, context: html, text, full: html, text
6e5118b8c0e6c06679404505a69f50d95cd72edd Thu Nov 10 16:12:43 2016 -0800
- adding mouse strains hal file refs #13553
- src/hg/makeDb/trackDb/mouse/mm10/mouseStrains.cactus.trackDb.ra - lines changed 172, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra - lines changed 2, context: html, text, full: html, text
4e76008324cf928870ad31ff25872a28f5874e3b Mon Nov 14 10:11:18 2016 -0800
- v342 preview1 refs #18302
- src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text
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