7f51a5729d96af40876b1639eccfa57eaa96c72b
jcasper
  Thu Nov 10 13:55:58 2016 -0800
Turning codon numbers on by default for GenePred tracks, refs #15459

diff --git src/hg/hgTracks/simpleTracks.c src/hg/hgTracks/simpleTracks.c
index 109c6bd..4fc05bf 100644
--- src/hg/hgTracks/simpleTracks.c
+++ src/hg/hgTracks/simpleTracks.c
@@ -3713,31 +3713,31 @@
 				drawOpt == baseColorDrawDiffCodons ||
 				drawOpt == baseColorDrawGenomicCodons);
 if (psl && baseColorNeedsCodons)
     {
     boolean isXeno = ((tg->subType == lfSubXeno) || (tg->subType == lfSubChain) ||
 		      startsWith("mrnaBla", tg->table));
     int sizeMul = pslIsProtein(psl) ? 3 : 1;
     lf->codons = baseColorCodonsFromPsl(lf, psl, sizeMul, isXeno, maxShade, drawOpt, tg);
     }
 else if (drawOpt > baseColorDrawOff)
     {
     struct genePred *gp = NULL;
     if (startsWith("genePred", tg->tdb->type) || startsWith("bigGenePred", tg->tdb->type))
 	gp = (struct genePred *)(lf->original);
     if (gp && gp->cdsStart != gp->cdsEnd)
-        lf->codons = baseColorCodonsFromGenePred(lf, gp, (drawOpt != baseColorDrawDiffCodons), cartUsualBooleanClosestToHome(cart, tg->tdb, FALSE, CODON_NUMBERING_SUFFIX, FALSE));
+        lf->codons = baseColorCodonsFromGenePred(lf, gp, (drawOpt != baseColorDrawDiffCodons), cartUsualBooleanClosestToHome(cart, tg->tdb, FALSE, CODON_NUMBERING_SUFFIX, TRUE));
     }
 if (psl && drawOpt == baseColorDrawCds && !zoomedToCdsColorLevel)
     baseColorSetCdsBounds(lf, psl, tg);
 
 tallStart = lf->tallStart;
 tallEnd = lf->tallEnd;
 if ((tallStart == 0 && tallEnd == 0) && lf->start != 0 && !sameWord(tg->table, "jaxQTL3"))
     {
     // sometimes a bed <8 will get passed off as a bed 8, tsk tsk
     tallStart = lf->start;
     tallEnd   = lf->end;
     }
 int ourStart = lf->start;
 if (ourStart < winStart)
     ourStart = winStart;