1888f6dd81f220f2ccd0e49c9b8a9a817ae0618c kate Thu Nov 10 15:59:18 2016 -0800 Cleanup C code. refs #17369 diff --git src/hg/inc/hui.h src/hg/inc/hui.h index 4a57e87..b7bc386 100644 --- src/hg/inc/hui.h +++ src/hg/inc/hui.h @@ -1126,37 +1126,55 @@ // Confirms that this track has encode Peak cfgUI void encodePeakCfgUi(struct cart *cart, struct trackDb *tdb, char *name, char *title, boolean boxed); // Put up UI for filtering wgEnocde peaks based on score, Pval and Qval void genePredCfgUi(struct cart *cart, struct trackDb *tdb, char *name, char *title, boolean boxed); // Put up genePred-specific controls void wigMafCfgUi(struct cart *cart, struct trackDb *tdb,char *name, char *title, boolean boxed, char *db); /* UI for maf/wiggle track */ void bamCfgUi(struct cart *cart, struct trackDb *tdb, char *name, char *title, boolean boxed); /* BAM: short-read-oriented alignment file format. */ + void lrgCfgUi(struct cart *cart, struct trackDb *tdb, char *name, char *title, boolean boxed); /* LRG: Locus Reference Genomic sequences mapped to assembly. */ void lrgTranscriptAliCfgUi(struct cart *cart, struct trackDb *tdb, char *name, char *title, boolean boxed); /* LRG Transcripts: Locus Reference Genomic transcript sequences mapped to assembly. */ +/* GTEx: Genotype Tissue Expression */ + +void gtexGeneUiGeneLabel(struct cart *cart, char *track, struct trackDb *tdb); +/* Radio buttons to select format of gene label */ + +void gtexGeneUiCodingFilter(struct cart *cart, char *track, struct trackDb *tdb); +/* Checkbox to restrict display to protein coding genes */ + +void gtexGeneUiGeneModel(struct cart *cart, char *track, struct trackDb *tdb); +/* Checkbox to enable display of GTEx gene model */ + +void gtexGeneUiLogTransform(struct cart *cart, char *track, struct trackDb *tdb); +/* Checkbox to select log-transformed RPKM values */ + +void gtexGeneUiViewLimits(struct cart *cart, char *track, struct trackDb *tdb); +/* Set viewing limits if log transform not checked */ + void gtexGeneUi(struct cart *cart, struct trackDb *tdb, char *name, char *title, boolean boxed); /* GTEx (Genotype Tissue Expression) per gene data */ boolean tdbSortPrioritiesFromCart(struct cart *cart, struct trackDb **tdbList); // Updates the tdb->priority from cart then sorts the list anew. // Returns TRUE if priorities obtained from cart boolean tdbRefSortPrioritiesFromCart(struct cart *cart, struct slRef **tdbRefList); /* Updates the tdb->priority from cart then sorts the list anew. Returns TRUE if priorities obtained from cart */ enum trackVisibility visCompositeViewDefault(struct trackDb *parentTdb,char *view); // returns the default track visibility of particular view within a composite track boolean isNameAtParentLevel(struct trackDb *tdb,char *name);