38fe0330488867c168c817169bbf1c49806c5cfb
kate
  Fri Oct 7 15:32:40 2016 -0700
Move tissue table to code for flexibility/maintenance. refs #17369

diff --git src/hg/hgGtexTrackSettings/hgGtexTrackSettings.c src/hg/hgGtexTrackSettings/hgGtexTrackSettings.c
index 10ae215..3b072a8 100644
--- src/hg/hgGtexTrackSettings/hgGtexTrackSettings.c
+++ src/hg/hgGtexTrackSettings/hgGtexTrackSettings.c
@@ -1,107 +1,160 @@
 /* hgGtexTrackSettings: Configure GTEx track
  *
  * Copyright (C) 2016 The Regents of the University of California
  */
 
 #include "common.h"
 #include "cart.h"
 #include "cartJson.h"
 #include "cheapcgi.h"
 #include "errCatch.h"
 #include "googleAnalytics.h"
 #include "hCommon.h"
 #include "hgConfig.h"
 #include "hdb.h"
 #include "htmshell.h"
 #include "hubConnect.h"
 #include "hui.h"
 #include "jsHelper.h"
 #include "jsonParse.h"
 #include "obscure.h"  // for readInGulp
 #include "regexHelper.h"
 #include "suggest.h"
 #include "trackHub.h"
 #include "trix.h"
 #include "web.h"
 
+#include "gtexInfo.h"
+#include "gtexTissue.h"
+
 /* Global Variables */
 struct cart *cart = NULL;             /* CGI and other variables */
 struct hash *oldVars = NULL;          /* Old contents of cart before it was updated by CGI */
 
 static void doCartJson()
 /* Perform UI commands to update the cart and/or retrieve cart vars & metadata. */
 {
 struct cartJson *cj = cartJsonNew(cart);
 //e.g. cartJsonRegisterHandler(cj, "setTaxId", setTaxId);
 cartJsonExecute(cj);
 }
 
 static void doJsIncludes()
 /* Include JS libraries.  From hgGateway (think about libifying) */
 {
 //puts("<script src=\"../js/es5-shim.4.0.3.min.js\"></script>");
 //puts("<script src=\"../js/es5-sham.4.0.3.min.js\"></script>");
 //puts("<script src=\"../js/lodash.3.10.0.compat.min.js\"></script>");
 puts("<script src=\"../js/cart.js\"></script>");
 
 webIncludeResourceFile("jquery-ui.css");
 jsIncludeFile("jquery-ui.js", NULL);
 jsIncludeFile("jquery.watermarkinput.js", NULL);
 jsIncludeFile("utils.js",NULL);
 }
 
+static void printTissueTable(char *version)
+/* Output HTML with tissue labels and colors, in 2 columns, to fit next to body map */
+{
+struct gtexTissue *tis, *tissues = gtexGetTissues(version);
+struct gtexTissue **tisTable = NULL;
+int count = slCount(tissues);
+AllocArray(tisTable, count);
+int i=0, col=0;
+int cols = 2;
+int last = count/2 + 1;
+
+puts("<table class='tissueTable'>");
+puts("<tr>");
+for (tis = tissues; tis != NULL; tis = tis->next)
+    {
+    if (tis->id < last)
+        i = tis->id * 2;
+    else
+        i = (tis->id - last) * 2 + 1;
+    tisTable[i] = tis;
+    }
+for (i=0; i<count; i++)
+    {
+    tis = tisTable[i];
+    printf("<td class='tissueColor' bgcolor=%06X></td>"
+           "<td class='tissueLabel' id='%s'>%s</td>", 
+                tis->color, tis->name, tis->description);
+    col++;
+    if (col > cols-1)
+        {
+        puts("</tr>\n<tr>");
+        col = 0;
+        }
+    }
+puts("</tr>\n");
+puts("</table>");
+}
+
 static void doMainPage()
 /* Send HTML with javascript to bootstrap the user interface. */
 {
 // Start web page with new banner
 char *db = NULL, *genome = NULL, *clade = NULL;
 getDbGenomeClade(cart, &db, &genome, &clade, oldVars);
 
 // char *chromosome = cartUsualString(cart, "c", hDefaultChrom(database));
 //char *track = cartString(cart, "g");
 
 webStartJWestNoBanner(cart, db, "Genome Browser GTEx Track Settings");
 puts("<link rel=\"stylesheet\" href=\"../style/bootstrap.min.css\">");
 puts("<link rel=\"stylesheet\" href=\"../style/hgGtexTrackSettings.css\">");
 
-// The visible page elements are all in ./hgGtexTrackSettings.html, which is transformed into a quoted .h
+// The initial visible page elements are hgGtexTrackSettings.html, 
+// which is transformed into a quoted .h
 // file containing a string constant that we #include and print here (see makefile).
 puts(
 #include "hgGtexTrackSettings.html.h"
 );
 
+//struct tdb *tdbList = NULL;
+//struct trackDb *tdb = tdbForTrack(db, track, &tdbList);
+//printTissueTable(gtexGetVersion(tdb->table));
+
+char *table = "gtexGene";
+
+printTissueTable(gtexVersion(table));
+
+// end panel, section and body layout container 
+puts("</div></div></div");
+
 // JS libraries
 doJsIncludes();
 
 // Main JS
 puts("<script src=\"../js/hgGtexTrackSettings.js\"></script>");
 
 webIncludeFile("inc/jWestFooter.html");
 
 webEndJWest();
 }
 
 
 void doMiddle(struct cart *theCart)
 /* Display the main page or execute a command and update the page */
 {
 cart = theCart;
 if (cgiOptionalString(CARTJSON_COMMAND))
     doCartJson();
 else
     doMainPage();
 }
 
 int main(int argc, char *argv[])
 /* Process CGI / command line. */
 {
 /* Null terminated list of CGI Variables we don't want to save
  * permanently. */
 char *excludeVars[] = {CARTJSON_COMMAND, NULL};
 cgiSpoof(&argc, argv);
 oldVars = hashNew(10);
 cartEmptyShellNoContent(doMiddle, hUserCookie(), excludeVars, oldVars);
 return 0;
 }