135c5c06f4aa65c8d660b621f682ef88559c5f59 kate Thu Oct 6 14:19:39 2016 -0700 Improvements to visual layout of tissue table, using design from Jeff West (DRAFT03c_BodyMapBrowserPage.pdf). refs #17639 diff --git src/hg/hgGtexTrackSettings/hgGtexTrackSettings.html src/hg/hgGtexTrackSettings/hgGtexTrackSettings.html index 2c58fd3..440f3ae 100644 --- src/hg/hgGtexTrackSettings/hgGtexTrackSettings.html +++ src/hg/hgGtexTrackSettings/hgGtexTrackSettings.html @@ -1,185 +1,195 @@
GTEx Track     Gene Expression in 53 tissues from GTEx RNA-seq of 8555 samples (570 donors)    GRCh37 / hg19
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Log10 transform:
View limits maximum: RPKM (range 0-711778)
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+ Limit to genes scored at or above: (range 0-1000)
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Choose Tissues
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    Adipose - Subcutaneous    Colon - Transverse
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    Adipose - Subcutaneous    Colon - Transverse
    Adipose - Visceral (Omentum)    Esophagus - Gastroesophageal Junction
    Adipose - Visceral (Omentum)    Esophagus - Gastroesophageal Junction
    Adrenal Gland    Esophagus - Mucosa
    Adrenal Gland    Esophagus - Mucosa
    Artery - Aorta    Esophagus - Muscularis
    Artery - Aorta    Esophagus - Muscularis
    Artery - Coronary    Fallopian Tube
    Artery - Coronary    Fallopian Tube
    Artery - Tibial    Heart - Atrial Appendage
    Artery - Tibial    Heart - Atrial Appendage
    Bladder    Heart - Left Ventricle
    Bladder    Heart - Left Ventricle
    Brain - Amygdala    Kidney - Cortex
    Brain - Amygdala    Kidney - Cortex
    Brain - Anterior cingulate cortex (BA24)    Liver
    Brain - Anterior cingulate cortex (BA24)    Liver
    Brain - Caudate (basal ganglia)    Lung
    Brain - Caudate (basal ganglia)    Lung
    Brain - Cerebellar Hemisphere    Minor Salivary Gland
    Brain - Cerebellar Hemisphere    Minor Salivary Gland
    Brain - Cerebellum    Muscle - Skeletal
    Brain - Cerebellum    Muscle - Skeletal
    Brain - Cortex    Nerve - Tibial
    Brain - Cortex    Nerve - Tibial
    Brain - Frontal Cortex (BA9)    Ovary
    Brain - Frontal Cortex (BA9)    Ovary
    Brain - Hippocampus    Pancreas
    Brain - Hippocampus    Pancreas
    Brain - Hypothalamus    Pituitary
    Brain - Hypothalamus    Pituitary
    Brain - Nucleus accumbens (basal ganglia)    Prostate
    Brain - Nucleus accumbens (basal ganglia)    Prostate
    Brain - Putamen (basal ganglia)    Skin - Not Sun Exposed (Suprapubic)
    Brain - Putamen (basal ganglia)    Skin - Not Sun Exposed (Suprapubic)
    Brain - Spinal cord (cervical c-1)    Skin - Sun Exposed (Lower leg)
    Brain - Spinal cord (cervical c-1)    Skin - Sun Exposed (Lower leg)
    Brain - Substantia nigra    Small Intestine - Terminal Ileum
    Brain - Substantia nigra    Small Intestine - Terminal Ileum
    Breast - Mammary Tissue    Spleen
    Breast - Mammary Tissue    Spleen
    Cells - EBV-transformed lymphocytes    Stomach
    Cells - EBV-transformed lymphocytes    Stomach
    Cells - Transformed fibroblasts    Testis
    Cells - Transformed fibroblasts    Testis
    Cervix - Ectocervix    Thyroid
    Cervix - Ectocervix    Thyroid
    Cervix - Endocervix    Uterus
    Cervix - Endocervix    Uterus
    Colon - Sigmoid    Vagina
    Colon - Sigmoid    Vagina
    Whole Blood
    Whole Blood