280cec9d1154fc2613fcf127a988b5252c9fa824 kate Wed Sep 28 16:42:40 2016 -0700 First cut CGI with body map illustration for tissue selection: GTEx track config. refs #17369 diff --git src/hg/hgGtexTrackSettings/hgGtexTrackSettings.html src/hg/hgGtexTrackSettings/hgGtexTrackSettings.html new file mode 100644 index 0000000..a7d77ef --- /dev/null +++ src/hg/hgGtexTrackSettings/hgGtexTrackSettings.html @@ -0,0 +1,184 @@ +
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+ GTEx Track +     Gene Expression in 53 tissues from GTEx RNA-seq of 8555 samples (570 donors)    + GRCh37 / hg19 +
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GO
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Configure
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GO
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+ Label: + gene symbol + accession + both +
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+Limit to protein coding genes: + +
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+Show GTEx gene model + +
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+Log10 transform: + +
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+View limits maximum: + RPKM (range 0-711778) +
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+ Show only items with score at or above: + + (range 0-1000) +
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Choose Tissues
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set all
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clear all
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GO
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    Adipose - Subcutaneous    Colon - Transverse
    Adipose - Visceral (Omentum)    Esophagus - Gastroesophageal Junction
    Adrenal Gland    Esophagus - Mucosa
    Artery - Aorta    Esophagus - Muscularis
    Artery - Coronary    Fallopian Tube
    Artery - Tibial    Heart - Atrial Appendage
    Bladder    Heart - Left Ventricle
    Brain - Amygdala    Kidney - Cortex
    Brain - Anterior cingulate cortex (BA24)    Liver
    Brain - Caudate (basal ganglia)    Lung
    Brain - Cerebellar Hemisphere    Minor Salivary Gland
    Brain - Cerebellum    Muscle - Skeletal
    Brain - Cortex    Nerve - Tibial
    Brain - Frontal Cortex (BA9)    Ovary
    Brain - Hippocampus    Pancreas
    Brain - Hypothalamus    Pituitary
    Brain - Nucleus accumbens (basal ganglia)    Prostate
    Brain - Putamen (basal ganglia)    Skin - Not Sun Exposed (Suprapubic)
    Brain - Spinal cord (cervical c-1)    Skin - Sun Exposed (Lower leg)
    Brain - Substantia nigra    Small Intestine - Terminal Ileum
    Breast - Mammary Tissue    Spleen
    Cells - EBV-transformed lymphocytes    Stomach
    Cells - Transformed fibroblasts    Testis
    Cervix - Ectocervix    Thyroid
    Cervix - Endocervix    Uterus
    Colon - Sigmoid    Vagina
    Whole Blood
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