Commits for kent

v341_base to v342_preview (2016-11-07 to 2016-11-14) v342

fc3ea13605d209284b5c555b51f2e7b150d83597 Wed Nov 2 18:06:56 2016 -0700

• Refactoring code to be shorter in the ignored formats, and adding text and html to the ignored list
  • src/hg/cirm/cdw/cdwMakeEnrichments/cdwMakeEnrichments.c - lines changed 31, context: html, text, full: html, text

9521430396e78ea99f63258a1d399b5343870acc Mon Nov 7 14:25:34 2016 -0800

• Starting to document version changes in web site.
  • src/hg/cirm/cdw/cdwWebBrowse/version.doc - lines changed 5, context: html, text, full: html, text

0b80133a4247fe337090f0d92b0b4d5550a72690 Tue Nov 8 11:22:17 2016 -0800

• Adding Content-Length: tag to http header. Seems it is required for udc and hence track hubs to work.
  • src/hg/cirm/cdw/cdwGetFile/cdwGetFile.c - lines changed 1, context: html, text, full: html, text

39776a6084cfea5605f90b053a066e7458c6b16a Tue Nov 8 11:24:03 2016 -0800

• Fixing it so that links to genome browser and direct html and pdf file browse links go through cdwGetFile rather than using the now nonexisting link to htdocs/cdw. This fixes bugs that resulted from removing that link, which we needed to do for security reasons.
  • src/hg/cirm/cdw/cdwWebBrowse/cdwWebBrowse.c - lines changed 53, context: html, text, full: html, text

9c1d574ebfc2eba73c7999133e8462684cf1223a Tue Nov 8 12:19:24 2016 -0800

• Renaming printMatchingStanzas to cdwPrintMatchingStanzas, putting declaration of it in inc/cdwLib.h.
  • src/hg/cirm/cdw/cdwGetMetadataAsFile/cdwGetMetadataAsFile.c - lines changed 1, context: html, text, full: html, text
  • src/hg/cirm/cdw/cdwWebBrowse/cdwWebBrowse.c - lines changed 1, context: html, text, full: html, text
  • src/hg/cirm/cdw/inc/cdwLib.h - lines changed 3, context: html, text, full: html, text
  • src/hg/cirm/cdw/lib/cdwLib.c - lines changed 1, context: html, text, full: html, text

fddc333f0f9c9248f037747a980d60d1474bfcc5 Tue Nov 8 12:20:10 2016 -0800

• Bumping version number.
  • src/hg/cirm/cdw/cdwWebBrowse/cdwWebBrowse.c - lines changed 1, context: html, text, full: html, text

4ec7a642d90b0877ff26c2ba48f9f97adc833925 Tue Nov 8 13:31:31 2016 -0800

• Adding support for jpg and pdf Content-type.
  • src/hg/cirm/cdw/cdwGetFile/cdwGetFile.c - lines changed 5, context: html, text, full: html, text

e367d1148b0c1c61e6881a2d1e9d9684421c1a0b Wed Nov 9 15:23:09 2016 -0800

• Eliminating a crash on old files that didn't validate by adding a null check.
  • src/hg/cirm/cdw/lib/cdwLib.c - lines changed 3, context: html, text, full: html, text