dccdf29485000ddce07f65a431d52a51ffd158cf
braney
  Wed Nov 16 18:41:22 2016 -0800
add support for protein psls in bigPsl

diff --git src/hg/lib/bigPsl.as src/hg/lib/bigPsl.as
index 96b9911..a8c9bdd 100644
--- src/hg/lib/bigPsl.as
+++ src/hg/lib/bigPsl.as
@@ -17,17 +17,18 @@
     uint    oChromStart;"Start position in other chromosome"
     uint    oChromEnd;  "End position in other chromosome"
     char[1] oStrand;    "+ or -, - means that psl was reversed into BED-compatible coordinates" 
     uint    oChromSize; "Size of other chromosome."
     int[blockCount] oChromStarts; "Start positions relative to oChromStart or from oChromStart+oChromSize depending on strand"
 
     lstring  oSequence;  "Sequence on other chrom (or edit list, or empty)"
     string   oCDS;       "CDS in NCBI format"
 
     uint    chromSize;"Size of target chromosome"
 
     uint match;        "Number of bases matched."
     uint misMatch; " Number of bases that don't match "
     uint repMatch; " Number of bases that match but are part of repeats "
     uint nCount;   " Number of 'N' bases "
+    uint seqType;    "0=empty, 1=nucleotide, 2=amino_acid"
     )