3a5ceb6cf9b3a4869e57ab621d1143fbd0573a5a braney Wed Nov 23 17:01:52 2016 -0800 implements blat results to custom track using bigPsl. Requires hg.conf variable useBlatBigPsl=on, otherwise old behavior exists diff --git src/makefile src/makefile index 78c9d0e..3dbcd0d 100644 --- src/makefile +++ src/makefile @@ -17,30 +17,31 @@ @./checkUmask.sh @MACHTYPE=${MACHTYPE} ./machTest.sh cd lib && ${MAKE} cd jkOwnLib && ${MAKE} cd parasol/lib && ${MAKE} cd htslib && ${MAKE} hgLib: @./hg/sqlEnvTest.sh cd hg/lib && ${MAKE} libs: topLibs hgLib cgi: libs cd hg && ${MAKE} cgi + cd utils/bedToBigBed && ${MAKE} cgi cgi-alpha: libs cd hg && ${MAKE} alpha cgi-beta: check-beta libs cd hg && ${MAKE} beta check-beta: # this will fail if we are not in a beta checkout: git branch | egrep '\* v[0-9]+_branch' > /dev/null blatSuite: topLibs hgLib cd blat && ${MAKE} cd gfClient && ${MAKE} cd gfServer && ${MAKE}