3a5ceb6cf9b3a4869e57ab621d1143fbd0573a5a
braney
  Wed Nov 23 17:01:52 2016 -0800
implements blat results to custom track using bigPsl.  Requires hg.conf
variable useBlatBigPsl=on, otherwise old behavior exists

diff --git src/utils/bedToBigBed/makefile src/utils/bedToBigBed/makefile
index 9386cf4..494f3cb 100644
--- src/utils/bedToBigBed/makefile
+++ src/utils/bedToBigBed/makefile
@@ -1,4 +1,18 @@
 kentSrc = ../..
 A = bedToBigBed
 include $(kentSrc)/inc/userApp.mk
 L += -lm -lz ${SOCKETLIB}
+
+cgi:: compile
+	chmod a+rx $A${EXE}
+	@if [ ! -d "${CGI_BIN}-${USER}/loader" ]; then \
+		${MKDIR} ${CGI_BIN}-${USER}/loader; \
+	fi
+	rm -f ${CGI_BIN}-${USER}/loader/$A
+	mv $A${EXE} ${CGI_BIN}-${USER}/loader/$A
+	for F in ${SQL_FILES}; do \
+	    B=`basename $$F` ; \
+	    rm -f ${DESTDIR}${CGI_BIN}-${USER}/loader/$$B ; \
+	    cp -p $$F ${DESTDIR}${CGI_BIN}-${USER}/loader/$$B ; \
+	done
+