Commits for hiram

v342_preview to v342_preview2 (2016-11-14 to 2016-11-28) v342

142948ffb4e89b89443006817bb49990dd1a7924 Tue Nov 15 10:32:50 2016 -0800

• allow a halSnake track to declare database alias names refs #13553
  • src/hg/hgTracks/snakeTrack.c - lines changed 14, context: html, text, full: html, text

5eb9120e25320a9643c2cba7e331682d6b4d6047 Tue Nov 15 11:41:38 2016 -0800

• adding mouse strain halSnake track refs #13553
  • src/hg/makeDb/trackDb/mouse/mm10/mouseStrains.cactus.trackDb.ra - lines changed 14, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouseStrains.html - lines changed 98, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn6/mouseStrains.cactus.trackDb.ra - lines changed 163, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn6/trackDb.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 1, context: html, text, full: html, text

9c6ff1359fac6e8ba96d9a4b6b5613b88ffce412 Wed Nov 16 09:46:53 2016 -0800

• add -lz and -lm to everything refs #18336
  • src/inc/common.mk - lines changed 2, context: html, text, full: html, text
  • src/inc/userApp.mk - lines changed 3, context: html, text, full: html, text

af11f081301ae8b83914773504013e9dccba62d6 Thu Nov 17 14:47:33 2016 -0800

• better long labels refs #13553
  • src/hg/makeDb/doc/mouseStrains/GCA_001624185.1_129S1_SvImJ_v1/GCA_001624185.1_129S1_SvImJ_v1.cactus.trackDb.txt - lines changed 36, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624215.1_A_J_v1/GCA_001624215.1_A_J_v1.cactus.trackDb.txt - lines changed 36, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624295.1_AKR_J_v1/GCA_001624295.1_AKR_J_v1.cactus.trackDb.txt - lines changed 36, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624445.1_CAST_EiJ_v1/GCA_001624445.1_CAST_EiJ_v1.cactus.trackDb.txt - lines changed 36, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624475.1_CBA_J_v1/GCA_001624475.1_CBA_J_v1.cactus.trackDb.txt - lines changed 36, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624505.1_DBA_2J_v1/GCA_001624505.1_DBA_2J_v1.cactus.trackDb.txt - lines changed 36, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624535.1_FVB_NJ_v1/GCA_001624535.1_FVB_NJ_v1.cactus.trackDb.txt - lines changed 36, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624675.1_NOD_ShiLtJ_v1/GCA_001624675.1_NOD_ShiLtJ_v1.cactus.trackDb.txt - lines changed 36, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624745.1_NZO_HlLtJ_v1/GCA_001624745.1_NZO_HlLtJ_v1.cactus.trackDb.txt - lines changed 36, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624775.1_PWK_PhJ_v1/GCA_001624775.1_PWK_PhJ_v1.cactus.trackDb.txt - lines changed 36, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624835.1_WSB_EiJ_v1/GCA_001624835.1_WSB_EiJ_v1.cactus.trackDb.txt - lines changed 36, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624865.1_SPRET_EiJ_v1/GCA_001624865.1_SPRET_EiJ_v1.cactus.trackDb.txt - lines changed 36, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001632525.1_BALB_cJ_v1/GCA_001632525.1_BALB_cJ_v1.cactus.trackDb.txt - lines changed 36, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001632555.1_C57BL_6NJ_v1/GCA_001632555.1_C57BL_6NJ_v1.cactus.trackDb.txt - lines changed 36, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001632575.1_C3H_HeJ_v1/GCA_001632575.1_C3H_HeJ_v1.cactus.trackDb.txt - lines changed 36, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001632615.1_LP_J_v1/GCA_001632615.1_LP_J_v1.cactus.trackDb.txt - lines changed 36, context: html, text, full: html, text

d9c0dfab390f345628526c839ca68651947a2236 Thu Nov 17 15:16:16 2016 -0800

• better long labels refs #13553
  • src/hg/makeDb/doc/mouseStrains/GCA_001624185.1_129S1_SvImJ_v1/GCA_001624185.1_129S1_SvImJ_v1.cactus.trackDb.txt - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624215.1_A_J_v1/GCA_001624215.1_A_J_v1.cactus.trackDb.txt - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624295.1_AKR_J_v1/GCA_001624295.1_AKR_J_v1.cactus.trackDb.txt - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624445.1_CAST_EiJ_v1/GCA_001624445.1_CAST_EiJ_v1.cactus.trackDb.txt - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624475.1_CBA_J_v1/GCA_001624475.1_CBA_J_v1.cactus.trackDb.txt - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624505.1_DBA_2J_v1/GCA_001624505.1_DBA_2J_v1.cactus.trackDb.txt - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624535.1_FVB_NJ_v1/GCA_001624535.1_FVB_NJ_v1.cactus.trackDb.txt - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624675.1_NOD_ShiLtJ_v1/GCA_001624675.1_NOD_ShiLtJ_v1.cactus.trackDb.txt - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624745.1_NZO_HlLtJ_v1/GCA_001624745.1_NZO_HlLtJ_v1.cactus.trackDb.txt - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624775.1_PWK_PhJ_v1/GCA_001624775.1_PWK_PhJ_v1.cactus.trackDb.txt - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624835.1_WSB_EiJ_v1/GCA_001624835.1_WSB_EiJ_v1.cactus.trackDb.txt - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001624865.1_SPRET_EiJ_v1/GCA_001624865.1_SPRET_EiJ_v1.cactus.trackDb.txt - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001632525.1_BALB_cJ_v1/GCA_001632525.1_BALB_cJ_v1.cactus.trackDb.txt - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001632555.1_C57BL_6NJ_v1/GCA_001632555.1_C57BL_6NJ_v1.cactus.trackDb.txt - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001632575.1_C3H_HeJ_v1/GCA_001632575.1_C3H_HeJ_v1.cactus.trackDb.txt - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/doc/mouseStrains/GCA_001632615.1_LP_J_v1/GCA_001632615.1_LP_J_v1.cactus.trackDb.txt - lines changed 17, context: html, text, full: html, text

eb572b9de60c49871e84bf8b6bd548210b69d44f Thu Nov 17 15:21:02 2016 -0800

• attempting to make the hal links prettier refs #13553
  • src/hg/hgc/hgc.c - lines changed 30, context: html, text, full: html, text

79cfbc46d6507b99aa722b1193deb85dfd89ecc8 Thu Nov 17 22:17:16 2016 -0800

• mouse hubs arrive with the attached hub refs #13553
  • src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn6/trackDb.ra - lines changed 1, context: html, text, full: html, text

337d1c77df23fb3ea3f35b24400e9b5d731bd4c4 Mon Nov 28 09:55:33 2016 -0800

• v342 preview2 refs #18399
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text