File Changes for kate

v342_preview to v342_preview2 (2016-11-14 to 2016-11-28) v342

• src/hg/hgGtexTrackSettings/README.txt
  • lines changed 6, context: html, text, full: html, text
    e328ec6cb3ebca54bec6c782ffff9f14aed6ebda Mon Nov 14 17:17:45 2016 -0800
    Edits to final art SVG as described in hg/hgGtexSettings/README.txt. refs #17369
  • lines changed 2, context: html, text, full: html, text
    f16abb2f99276fcf1811ef04f4f767ce1631c4c7 Wed Nov 16 16:27:45 2016 -0800
    Cleanup CSS. refs #17369
  • lines changed 21, context: html, text, full: html, text
    b694541552528887abb34b563336a17e0628e197 Thu Nov 17 15:00:40 2016 -0800
    Response to QA. 1. Align GO button. 2. Abandon bolding of tissue labels to preserve alignment with leader lines. 3. Draw leader line on top when highlighted. refs #17369
• src/hg/hgGtexTrackSettings/hgGtexTrackSettings.c
  • lines changed 2, context: html, text, full: html, text
    c74646cfe6256554338b95939bb5540812c059bd Mon Nov 14 17:19:06 2016 -0800
    Rename SVG to be more accurate. refs #17369
  • lines changed 32, context: html, text, full: html, text
    747eae7a2f3f12196fe59f6b2340f2c61eedac45 Tue Nov 15 14:44:59 2016 -0800
    Add last updated and schema link. refs #17369
  • lines changed 35, context: html, text, full: html, text
    f16abb2f99276fcf1811ef04f4f767ce1631c4c7 Wed Nov 16 16:27:45 2016 -0800
    Cleanup CSS. refs #17369
  • lines changed 2, context: html, text, full: html, text
    60b4b2383869d11fba48ea5dfe616d9b90ebaecf Thu Nov 17 09:43:58 2016 -0800
    Fix GO button (broken by CSS refactor). refs #17369
  • lines changed 10, context: html, text, full: html, text
    185dae5a5dd7912b1f08e0f0c19b756687a3c6db Thu Nov 17 09:53:38 2016 -0800
    Cleanup overlong lines. refs #17369
  • lines changed 46, context: html, text, full: html, text
    637185cb51ee2ce0651a4defe22862d735dfb3ff Thu Nov 17 15:01:34 2016 -0800
    Remove globals in response to code review. refs #17369
  • lines changed 1, context: html, text, full: html, text
    20fb3ee25697137ab4c9fff427f59249e906e109 Thu Nov 17 15:09:18 2016 -0800
    Add default track name if 'g' cart variable missing. To make this demo-friendly (run CGI directly). refs #17369
  • lines changed 2, context: html, text, full: html, text
    9a7fb2974573b7e57ddac45f2b35c80c66deca53 Mon Nov 21 11:31:32 2016 -0800
    1. Fix Firefox initialization -- it apparently loads SVG faster than Chrome, so need to check before setting event handler. 2. Fix HOME link image (UCSC browser logo), lost during CSS refactoring. refs #17369
  • lines changed 6, context: html, text, full: html, text
    f24a065a92a0545e812439a036867b9bc8f3c212 Mon Nov 21 12:19:19 2016 -0800
    Swap bodymap and config panels. More intuitive we think. refs #17369
  • lines changed 2, context: html, text, full: html, text
    7ea79bbbda7357606cc73423f790e1459492d9dd Mon Nov 21 17:07:18 2016 -0800
    Add pointer cursor to track description navigation arrows. Responding to Chris Lee comments. refs #17369
  • lines changed 1, context: html, text, full: html, text
    4696818cfc16fbc325297013a9a7a1966b1a665d Wed Nov 23 11:23:34 2016 -0800
    Move credit off illustration, to just below it. Request of QA. refs #17369
  • lines changed 4, context: html, text, full: html, text
    ca9e008e9edbcf048e0c4cd747c15a9c07ed9a26 Wed Nov 23 11:34:24 2016 -0800
    Minor layout repair. In response to QA. refs #17369
  • lines changed 1, context: html, text, full: html, text
    490dd90fc4afdee56311b607e3cfc2a7a69345de Wed Nov 23 11:36:51 2016 -0800
    Tweak credit, AnnZ request. refs #17369
• src/hg/hgGtexTrackSettings/hgGtexTrackSettings.html
  • lines changed 108, context: html, text, full: html, text
    29caec4eeb0bbd158ec6935c4d0bc4780d49c1e8 Thu Nov 17 10:15:35 2016 -0800
    Removing vestigial file. refs #17369
• src/hg/hgTracks/config.c
  • lines changed 2, context: html, text, full: html, text
    a9dd8b9c383927df373d50e5917b20c959c662fc Wed Nov 23 10:49:30 2016 -0800
    Link to new GTEX Body Map configuration page from hgc and config page. From QA review. refs #17369
• src/hg/hgTracks/hgTracks.c
  • lines changed 1, context: html, text, full: html, text
    e4ba9d262524dcb90690e480a3fa5ebe2e12fb13 Mon Nov 21 10:34:57 2016 -0800
    Suppress bodyMap UI under IE. (Additional work needed to make it functional). refs #17369
  • lines changed 4, context: html, text, full: html, text
    a9dd8b9c383927df373d50e5917b20c959c662fc Wed Nov 23 10:49:30 2016 -0800
    Link to new GTEX Body Map configuration page from hgc and config page. From QA review. refs #17369
• src/hg/hgc/gtexClick.c
  • lines changed 8, context: html, text, full: html, text
    8e01434bfdc7b343d768e46efe31441e9a1e5229 Mon Nov 21 10:59:31 2016 -0800
    Fix gene search with alternative item naming. refs #18412
• src/hg/hgc/hgc.c
  • lines changed 2, context: html, text, full: html, text
    a9dd8b9c383927df373d50e5917b20c959c662fc Wed Nov 23 10:49:30 2016 -0800
    Link to new GTEX Body Map configuration page from hgc and config page. From QA review. refs #17369
• src/hg/htdocs/images/bodyMap.svg
  • lines changed 960, context: html, text, full: html, text
    f3d78bbabb983d1179f2028a015651a6b3bf79a3 Mon Nov 14 17:16:14 2016 -0800
    Final art from Jeff West. With some corrections, and a credit line on the rock. refs #17369
  • lines changed 146, context: html, text, full: html, text
    e328ec6cb3ebca54bec6c782ffff9f14aed6ebda Mon Nov 14 17:17:45 2016 -0800
    Edits to final art SVG as described in hg/hgGtexSettings/README.txt. refs #17369
  • lines changed 1996, context: html, text, full: html, text
    c74646cfe6256554338b95939bb5540812c059bd Mon Nov 14 17:19:06 2016 -0800
    Rename SVG to be more accurate. refs #17369
• src/hg/htdocs/images/gtexBodyMap.svg
  • lines changed 1996, context: html, text, full: html, text
    c74646cfe6256554338b95939bb5540812c059bd Mon Nov 14 17:19:06 2016 -0800
    Rename SVG to be more accurate. refs #17369
  • lines changed 1, context: html, text, full: html, text
    f16abb2f99276fcf1811ef04f4f767ce1631c4c7 Wed Nov 16 16:27:45 2016 -0800
    Cleanup CSS. refs #17369
  • lines changed 1, context: html, text, full: html, text
    cfb2a129645c68bc7e0edb6f8a89e6fed5f8b879 Thu Nov 17 10:14:44 2016 -0800
    Fixed id on Brain Cerebellum; thanks to Angie for suggested area to dig at, from code review. refs #17369
  • lines changed 6, context: html, text, full: html, text
    f56f671c81a2560ffe62843863af4c80aeaf7f1e Thu Nov 17 13:09:20 2016 -0800
    Change easily changeable text labels to match GTEx labels (largely casification differences). Response to QA. refs #17369
  • lines changed 2, context: html, text, full: html, text
    d5af99c46e3bbdfe7a09a62cffab7d1c8c73861f Thu Nov 17 14:01:44 2016 -0800
    Illustration display fine tuning, in response to QA. 1. Change Skin suprapubic outline to black to match other tissues. Make breast visible when not highlighted. refs #17369
  • lines changed 1, context: html, text, full: html, text
    fd839b13a655839366a8cc231f5c9e4709c34042 Mon Nov 21 11:53:02 2016 -0800
    Tweak label position, in response to QA. refs #17369
  • lines changed 1, context: html, text, full: html, text
    132b97a008048228aa8658f8dcf358c518a6bb34 Mon Nov 21 12:40:31 2016 -0800
    Restore previous width, to preserve font size similarity to tissue table. refs #7136
  • lines changed 87, context: html, text, full: html, text
    4696818cfc16fbc325297013a9a7a1966b1a665d Wed Nov 23 11:23:34 2016 -0800
    Move credit off illustration, to just below it. Request of QA. refs #17369
• src/hg/htdocs/inc/gbFooter.html
  • lines changed 53, context: html, text, full: html, text
    f16abb2f99276fcf1811ef04f4f767ce1631c4c7 Wed Nov 16 16:27:45 2016 -0800
    Cleanup CSS. refs #17369
• src/hg/htdocs/style/bootstrap.min.css
  • lines changed 14, context: html, text, full: html, text
    d1862cafdb2f1e6527548d15c6ee24fcbe2077e9 Sat Nov 19 14:09:06 2016 -0800
    Using minimal bootstrap CSS for grid layout. refs #17369
• src/hg/htdocs/style/gb.css
  • lines changed 264, context: html, text, full: html, text
    f16abb2f99276fcf1811ef04f4f767ce1631c4c7 Wed Nov 16 16:27:45 2016 -0800
    Cleanup CSS. refs #17369
  • lines changed 6, context: html, text, full: html, text
    60b4b2383869d11fba48ea5dfe616d9b90ebaecf Thu Nov 17 09:43:58 2016 -0800
    Fix GO button (broken by CSS refactor). refs #17369
  • lines changed 4, context: html, text, full: html, text
    b694541552528887abb34b563336a17e0628e197 Thu Nov 17 15:00:40 2016 -0800
    Response to QA. 1. Align GO button. 2. Abandon bolding of tissue labels to preserve alignment with leader lines. 3. Draw leader line on top when highlighted. refs #17369
  • lines changed 3, context: html, text, full: html, text
    10882ae780149f4978bd4bb1233d914429a7adf5 Sat Nov 19 13:53:27 2016 -0800
    Fix alignment issue on Firefox. refs #17369
  • lines changed 1, context: html, text, full: html, text
    7eff837e8e696cc677550bcb184c81b0a8b87ed6 Mon Nov 21 12:11:05 2016 -0800
    Add margin to track description images, as per QA request. refs #17369
  • lines changed 1, context: html, text, full: html, text
    a51822e6fb60ef8640bce44bab2b22ebb7616d64 Mon Nov 21 12:12:03 2016 -0800
    Add margin around image on track description, as pwer QA request.
  • lines changed 4, context: html, text, full: html, text
    7ea79bbbda7357606cc73423f790e1459492d9dd Mon Nov 21 17:07:18 2016 -0800
    Add pointer cursor to track description navigation arrows. Responding to Chris Lee comments. refs #17369
  • lines changed 2, context: html, text, full: html, text
    d5c18df19333bae9bd4ccc0e1acc5819d083e0a8 Sun Nov 27 19:17:12 2016 -0800
    Layout tweak. refs #17369
• src/hg/htdocs/style/gbAfterMenu.css
  • lines changed 19, context: html, text, full: html, text
    bfa6b385b094aaae229a39dde91ff62df919b8ff Wed Nov 16 16:30:09 2016 -0800
    Cleanup CSS. refs #17369
• src/hg/htdocs/style/hgGtexTrackSettings.css
  • lines changed 6, context: html, text, full: html, text
    a8936307e2c298da14b8eef67b9607c2a6db7e47 Tue Nov 15 14:46:59 2016 -0800
    Add last updated and schema link. refs #17369
  • lines changed 285, context: html, text, full: html, text
    f16abb2f99276fcf1811ef04f4f767ce1631c4c7 Wed Nov 16 16:27:45 2016 -0800
    Cleanup CSS. refs #17369
  • lines changed 5, context: html, text, full: html, text
    b694541552528887abb34b563336a17e0628e197 Thu Nov 17 15:00:40 2016 -0800
    Response to QA. 1. Align GO button. 2. Abandon bolding of tissue labels to preserve alignment with leader lines. 3. Draw leader line on top when highlighted. refs #17369
  • lines changed 2, context: html, text, full: html, text
    8324f2b60ec7e0e7532d1ef5bc48a0eff31b7052 Thu Nov 17 15:25:02 2016 -0800
    Tweak font size to get closer to body map labels. refs #17369
  • lines changed 6, context: html, text, full: html, text
    1f86f70f8eec5861fce8294a718210258b1d739f Sat Nov 19 14:49:10 2016 -0800
    Add SVG sizing (needed by IE). refs #17369
  • lines changed 2, context: html, text, full: html, text
    0c923b0c57feb5bb2c8d857f7b101c52052ee918 Mon Nov 21 10:30:23 2016 -0800
    Syntax errs. refs #17369
  • lines changed 1, context: html, text, full: html, text
    0a7c44ba2677b94f2770c82bd38e78cc8db754ad Mon Nov 21 12:37:25 2016 -0800
    Add left margin so tissue table labels are closer to body map. refs #17369
  • lines changed 8, context: html, text, full: html, text
    4696818cfc16fbc325297013a9a7a1966b1a665d Wed Nov 23 11:23:34 2016 -0800
    Move credit off illustration, to just below it. Request of QA. refs #17369
  • lines changed 4, context: html, text, full: html, text
    ca9e008e9edbcf048e0c4cd747c15a9c07ed9a26 Wed Nov 23 11:34:24 2016 -0800
    Minor layout repair. In response to QA. refs #17369
• src/hg/htdocs/style/makefile
  • lines changed 1, context: html, text, full: html, text
    f16abb2f99276fcf1811ef04f4f767ce1631c4c7 Wed Nov 16 16:27:45 2016 -0800
    Cleanup CSS. refs #17369
  • lines changed 1, context: html, text, full: html, text
    3a7394d66eb8ba2d1777b1c304cd68e355d9a7bb Wed Nov 16 16:31:40 2016 -0800
    Cleanup CSS. refs #17369
• src/hg/inc/gtexUi.h
  • lines changed 12, context: html, text, full: html, text
    a9dd8b9c383927df373d50e5917b20c959c662fc Wed Nov 23 10:49:30 2016 -0800
    Link to new GTEX Body Map configuration page from hgc and config page. From QA review. refs #17369
• src/hg/inc/hui.h
  • lines changed 3, context: html, text, full: html, text
    a9dd8b9c383927df373d50e5917b20c959c662fc Wed Nov 23 10:49:30 2016 -0800
    Link to new GTEX Body Map configuration page from hgc and config page. From QA review. refs #17369
• src/hg/inc/web.h
  • lines changed 9, context: html, text, full: html, text
    f16abb2f99276fcf1811ef04f4f767ce1631c4c7 Wed Nov 16 16:27:45 2016 -0800
    Cleanup CSS. refs #17369
• src/hg/js/hgGtexTrackSettings.js
  • lines changed 24, context: html, text, full: html, text
    f16abb2f99276fcf1811ef04f4f767ce1631c4c7 Wed Nov 16 16:27:45 2016 -0800
    Cleanup CSS. refs #17369
  • lines changed 2, context: html, text, full: html, text
    60b4b2383869d11fba48ea5dfe616d9b90ebaecf Thu Nov 17 09:43:58 2016 -0800
    Fix GO button (broken by CSS refactor). refs #17369
  • lines changed 7, context: html, text, full: html, text
    b694541552528887abb34b563336a17e0628e197 Thu Nov 17 15:00:40 2016 -0800
    Response to QA. 1. Align GO button. 2. Abandon bolding of tissue labels to preserve alignment with leader lines. 3. Draw leader line on top when highlighted. refs #17369
  • lines changed 16, context: html, text, full: html, text
    936eb3cbf8b163d420be36aa98beccd665ded1b3 Thu Nov 17 15:55:06 2016 -0800
    Add event handlers to color patches in tissue table (friendlier). refs #17369
  • lines changed 19, context: html, text, full: html, text
    9a7fb2974573b7e57ddac45f2b35c80c66deca53 Mon Nov 21 11:31:32 2016 -0800
    1. Fix Firefox initialization -- it apparently loads SVG faster than Chrome, so need to check before setting event handler. 2. Fix HOME link image (UCSC browser logo), lost during CSS refactoring. refs #17369
• src/hg/lib/gbHeader.h
  • lines changed 18, context: html, text, full: html, text
    f16abb2f99276fcf1811ef04f4f767ce1631c4c7 Wed Nov 16 16:27:45 2016 -0800
    Cleanup CSS. refs #17369
  • lines changed 1, context: html, text, full: html, text
    9a7fb2974573b7e57ddac45f2b35c80c66deca53 Mon Nov 21 11:31:32 2016 -0800
    1. Fix Firefox initialization -- it apparently loads SVG faster than Chrome, so need to check before setting event handler. 2. Fix HOME link image (UCSC browser logo), lost during CSS refactoring. refs #17369
• src/hg/lib/gtexUi.c
  • lines changed 1, context: html, text, full: html, text
    aa0cfbb0615ef43df732be87847a759a72d532b5 Mon Nov 21 14:29:22 2016 -0800
    Layout sanitization. refs #17369
  • lines changed 1, context: html, text, full: html, text
    446d4dd6202954c076bb107023ae2677b6901b7f Mon Nov 21 14:37:53 2016 -0800
    Micro consistency tweak.
  • lines changed 28, context: html, text, full: html, text
    a9dd8b9c383927df373d50e5917b20c959c662fc Wed Nov 23 10:49:30 2016 -0800
    Link to new GTEX Body Map configuration page from hgc and config page. From QA review. refs #17369
  • lines changed 5, context: html, text, full: html, text
    791bce382259ecb38e5781d2c11f1f0d23ce4ddc Wed Nov 23 12:40:23 2016 -0800
    Remove temp config option. refs #17369
• src/hg/lib/hui.c
  • lines changed 10, context: html, text, full: html, text
    a9dd8b9c383927df373d50e5917b20c959c662fc Wed Nov 23 10:49:30 2016 -0800
    Link to new GTEX Body Map configuration page from hgc and config page. From QA review. refs #17369
• src/hg/lib/web.c
  • lines changed 34, context: html, text, full: html, text
    f16abb2f99276fcf1811ef04f4f767ce1631c4c7 Wed Nov 16 16:27:45 2016 -0800
    Cleanup CSS. refs #17369
• src/hg/makeDb/trackDb/human/gtexGeneExpr.html
  • lines changed 1, context: html, text, full: html, text
    c9d994962c2238b3d8b34a6067ac3337e828b62b Sat Nov 19 14:40:41 2016 -0800
    Fix minor HTML err.