Commits for mspeir

v342_preview to v342_preview2 (2016-11-14 to 2016-11-28) v342

212a8086c5717831e89537239a48f81273b0c059 Tue Nov 15 12:01:17 2016 -0800

• Adding coloring info and reference to ClinVar description page. Some other minor wording edits. refs #18377
  • src/hg/makeDb/trackDb/human/clinvar.html - lines changed 25, context: html, text, full: html, text

d949fff04e610f14ff4a2d962ab1849f3ccc590c Fri Nov 18 12:45:58 2016 -0800

• Adjust Augustus short and longLabels, refs #18381
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 2, context: html, text, full: html, text

ab87f4460ab9b564470285cde7f93f43d4ee9e10 Mon Nov 21 14:46:12 2016 -0800

• Adding note about ClinVar vs ExAC reprocessed variants and how we display the variant info from ClinVar FTP site, refs #16292
  • src/hg/makeDb/trackDb/human/clinvar.html - lines changed 7, context: html, text, full: html, text

cccce387b01e558b4917ef53f773e5233ef849d5 Tue Nov 22 12:39:36 2016 -0800

• Correcting usages of unlocalized vs unplaced in our description pages and docs, refs #16466
  • src/hg/htdocs/goldenPath/help/query.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cow/bosTau8/description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/cons7way.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/description.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/marmoset/calJac3/description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm7/description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm8/description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/orangutan/ponAbe2/gap.html - lines changed 1, context: html, text, full: html, text

ac9849c213f0b7b73eb7cacc7c0382437e228c1c Tue Nov 22 13:15:31 2016 -0800

• Fixing broken VisiGene description links, refs #17323
  • src/hg/htdocs/goldenPath/help/hgTracksHelp.html - lines changed 1, context: html, text, full: html, text
  • src/hg/visiGene/hgVisiGene/hgVisiGene.c - lines changed 2, context: html, text, full: html, text

997f530b3abf1e33b636be6255a30243205796d1 Tue Nov 22 13:22:59 2016 -0800

• Adding new script that scrapes public hubs on the RR for contact emails and places them on a genecats webpage, refs #18316
  • src/utils/qa/getPubHubContact.sh - lines changed 52, context: html, text, full: html, text