53a2e1ae6b18669a39f8d9fdd929c754f974f367 angie Fri Jan 6 09:44:31 2017 -0800 Fixing option spec for udcCache. refs #12216 note-43 diff --git src/hg/utils/vai.pl src/hg/utils/vai.pl index 4b5c4d0..ba31029 100755 --- src/hg/utils/vai.pl +++ src/hg/utils/vai.pl @@ -15,31 +15,31 @@ # Constants my $doQueryParam = "hgva_startQuery"; # Command line option variables with default values my $hgVai = '/usr/local/apache/cgi-bin/hgVai'; my $position = ''; my $rsId = 0; my $udcCache; my $debug = ''; # GetOpt option configuration for options that don't directly map to hgva_... CGI params, # and references to the corresponding global variables or handlers: my %optionConfig = ('hgVai=s' => \$hgVai, 'position=s' => \$position, 'rsId' => \$rsId, - 'udcCache' => \$udcCache, + 'udcCache=s' => \$udcCache, 'dry-run|n|debug' => \$debug, 'help|h' => sub { usage(0) }, ); # Command line options that map directly to hgva_... CGI params, with their default values # and descriptions my %paramOptions = ( geneTrack => ['refGene', '=track', 'Genome Browser track with transcript predictions'], include_intergenic => ['on', '=on|off', 'Include intergenic variants in output'], include_upDownstream => ['on', '=on|off', 'Include upstream and downstream variants in output'], include_nmdTranscript => ['on', '=on|off', 'Include variants in NMD transcripts in output'], include_exonLoss => ['on', '=on|off',