Commits for kent
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v343_preview2 to v343_base (2017-01-03 to 2017-01-09) v343
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fd56da452ba9cb650dec208215b764cd110c40ae Tue Jan 3 11:23:15 2017 -0800
- Making usage statement more consistent.
- src/tagStorm/tagStormDeleteTags/tagStormDeleteTags.c - lines changed 1, context: html, text, full: html, text
fb7235db79dcef536a49fad74529c2384887bc40 Tue Jan 3 14:01:36 2017 -0800
- Added utility function to remove empty stanzas.
- src/tagStorm/tagStormHoist/test.in - lines changed 93, context: html, text, full: html, text
9290d3bf91d0817cd34569bfffbc6d67907ce841 Tue Jan 3 14:03:00 2017 -0800
- Removing empty stanzas, which no longer end up screwing up hierarchy on read.
- src/tagStorm/tagStormHoist/tagStormHoist.c - lines changed 3, context: html, text, full: html, text
7a486464076e1ff5b2fe46878a915747d0f15c9c Tue Jan 3 14:13:42 2017 -0800
- Making test set more comprehensive.
- src/tagStorm/tagStormHoist/test.in - lines changed 2, context: html, text, full: html, text
936343c3167fc0fde1b54dca286c018689ff9025 Wed Jan 4 14:19:22 2017 -0800
- Making lineIx work for udcFile case.
482523a14c95bb1819b4e3ee74ed0037b7fd1b4f Thu Jan 5 12:54:52 2017 -0800
- responding to most of Kate's code review feedback refs #18611
- src/hg/cirm/cdw/cdwMakeFileTags/cdwMakeFileTags.c - lines changed 32, context: html, text, full: html, text
c69dea1a62dba064ed5f3053ccb428e15f8d63de Thu Jan 5 14:02:10 2017 -0800
- Refactoring cdwMakeFileTags refs #18611
- src/hg/cirm/cdw/cdwMakeFileTags/cdwMakeFileTags.c - lines changed 211, context: html, text, full: html, text
42314f49b54ee7e450fea7797bf25c74b8c5f743 Thu Jan 5 14:05:51 2017 -0800
- Cleaning up usage statement. refs #18611
- src/tagStorm/tagStormQuery/tagStormQuery.c - lines changed 6, context: html, text, full: html, text
a559984d5d4096c3616590f1e90fd92bafb2e28a Thu Jan 5 14:09:28 2017 -0800
- Freen helps debug a udcCache/linefile issue.
- src/hg/oneShot/freen/freen.c - lines changed 12, context: html, text, full: html, text
fffb473645d4ed13794dc747e23da9b701601920 Thu Jan 5 15:11:47 2017 -0800
- Adding tagStormToTab
- src/tagStorm/tagStormToTab/makefile - lines changed 3, context: html, text, full: html, text
- src/tagStorm/tagStormToTab/tagStormToTab.c - lines changed 42, context: html, text, full: html, text
115188883ac5352c028bba63ba80029a57092cad Thu Jan 5 15:11:58 2017 -0800
- Adding tagStormToTab
2682dc0d4299d8c72f892e6345faa7a516ea1425 Thu Jan 5 15:34:01 2017 -0800
- Making it so that fieldedTable tab-sep-files first (label) line need not start with a #
0fccc72cfec3b269d9002dde99b3cc263265fb7b Thu Jan 5 15:34:19 2017 -0800
- Explaining that the # in the label line is now optional.
- src/tagStorm/tagStormFromTab/tagStormFromTab.c - lines changed 2, context: html, text, full: html, text
7dc6b81fd111ac609870542a0da4fc2bf4faa98c Thu Jan 5 16:23:57 2017 -0800
- A little more refactoring in preparation for moving SQL creation stuff to library.
- src/hg/cirm/cdw/cdwMakeFileTags/cdwMakeFileTags.c - lines changed 77, context: html, text, full: html, text
7c6fc748aa7b23971669dc686510dcbff030d045 Thu Jan 5 16:42:52 2017 -0800
- Moving a bunch of the SQL creation code to library.
- src/hg/cirm/cdw/cdwMakeFileTags/cdwMakeFileTags.c - lines changed 320, context: html, text, full: html, text
ab485115a26471d12034a441d7ff48f2972d15d7 Thu Jan 5 16:43:05 2017 -0800
- Moving a bunch of the SQL creation code to library.
820a2723dbd2cf156feb9024944dae88c66779c9 Thu Jan 5 17:11:09 2017 -0800
- First cut of utility to convert tagStorm to a sql command.
- src/tagStorm/tagStormToSql/makefile - lines changed 3, context: html, text, full: html, text
- src/tagStorm/tagStormToSql/tagStormToSql.c - lines changed 99, context: html, text, full: html, text
9208d427b15fa0a175639d40a83bd52bda75f5c6 Thu Jan 5 17:13:08 2017 -0800
- Adding two parameters to tagStormWriteAsFlatTab, and deleting a redundant static routine.
92a933c2508762a11c12fbd3375551258894c987 Thu Jan 5 17:13:28 2017 -0800
- Adding two parameters to tagStormWriteAsFlatTab, and deleting a redundant static routine.
- src/tagStorm/tagStormReformat/tagStormReformat.c - lines changed 1, context: html, text, full: html, text
4642a53a01e0ef9e1037164bb32c51e966f1400f Thu Jan 5 17:13:59 2017 -0800
- Adding noSharp and null options.
- src/tagStorm/tagStormToTab/tagStormToTab.c - lines changed 9, context: html, text, full: html, text
66fcc2e08e33ad612c14003b08e851dbe44987b3 Thu Jan 5 22:53:36 2017 -0800
- Updating test sets
- src/tagStorm/tagStormInfo/tests/expected.counts - lines changed 5, context: html, text, full: html, text
- src/tagStorm/tagStormInfo/tests/expected.out - lines changed 5, context: html, text, full: html, text
- src/tagStorm/tagStormInfo/tests/expected.schema - lines changed 17, context: html, text, full: html, text
- src/tagStorm/tagStormInfo/tests/expected.vals - lines changed 19, context: html, text, full: html, text
- src/tagStorm/tagStormInfo/tests/makefile - lines changed 3, context: html, text, full: html, text
6f9e439038e3587389b3fad29d4e24476f4485c2 Thu Jan 5 22:55:42 2017 -0800
- Adding -schema flag to tagStormInfo
- src/tagStorm/tagStormInfo/tagStormInfo.c - lines changed 94, context: html, text, full: html, text
00f51e93f637bbae2d53d2eea1372cf0b5b1a754 Fri Jan 6 00:02:26 2017 -0800
- First cut of tagStormCheck
- src/tagStorm/tagStormCheck/makefile - lines changed 3, context: html, text, full: html, text
- src/tagStorm/tagStormCheck/tagStormCheck.c - lines changed 193, context: html, text, full: html, text
c841119661494598a15654915bb653f54a4a4345 Fri Jan 6 00:16:16 2017 -0800
- Improving usage message and allowing wildcards in tag names in schema.
- src/tagStorm/tagStormCheck/tagStormCheck.c - lines changed 51, context: html, text, full: html, text
805eeb76b27646c80769d264e39a4216209f2832 Fri Jan 6 00:17:46 2017 -0800
- Adding test files.
- src/tagStorm/tagStormCheck/test.schema - lines changed 18, context: html, text, full: html, text
- src/tagStorm/tagStormCheck/test.tags - lines changed 164, context: html, text, full: html, text
e9adb17a7dab941d267a6093eb10dd13eb3cd568 Fri Jan 6 00:19:08 2017 -0800
- Improving test set
- src/tagStorm/tagStormCheck/test.schema - lines changed 2, context: html, text, full: html, text
c2a85e74b442edb31a7d365c4695d0db2be2da14 Fri Jan 6 00:20:21 2017 -0800
- Improving punctuation in usage message.
- src/tagStorm/tagStormCheck/tagStormCheck.c - lines changed 2, context: html, text, full: html, text
3363c3080fa54a4489af441559d44e52f2face7b Fri Jan 6 00:21:07 2017 -0800
- Improving test set.
- src/tagStorm/tagStormInfo/tests/test.in - lines changed 20, context: html, text, full: html, text
ec02f84b0ca8f5935250c47470699cc80028c1e6 Fri Jan 6 01:47:55 2017 -0800
- Adding looseSchema and tightSchema options.
- src/tagStorm/tagStormInfo/tagStormInfo.c - lines changed 41, context: html, text, full: html, text
23ba0ea430e9e60f9b33a778fa5430b12c99a3a8 Fri Jan 6 10:33:46 2017 -0800
- Creating a tagStormQuery library function. Refactoring some stuff from the tagStormQuery command line utility into library.
- src/tagStorm/tagStormQuery/tagStormQuery.c - lines changed 10, context: html, text, full: html, text
172697d2287cc4e093dcd2d925d1b5f2c7795d78 Fri Jan 6 10:34:20 2017 -0800
- freen tests tagStormQuery.
- src/hg/oneShot/freen/freen.c - lines changed 12, context: html, text, full: html, text
b5a2415fd25848d2f4ab8e0bcc1565e2556b52ca Fri Jan 6 13:31:59 2017 -0800
- Adding tagStanzaFindInHash and tagStanzaFree functions.
- src/hg/oneShot/freen/freen.c - lines changed 1, context: html, text, full: html, text
9f14c73b4c289b89cfaf94f88ab39ee0264dc8f5 Fri Jan 6 13:33:36 2017 -0800
- Improving normal passes check output. Fixing bug in quoted value handling.
- src/tagStorm/tagStormCheck/tagStormCheck.c - lines changed 27, context: html, text, full: html, text
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